RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RUFY2Q8WXA3 655 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 BRI3BPQ8WY22 251 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF503Q96F45 646 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 BORCS6Q96GS4 357 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 SEC62Q99442 399 aaKnown RBP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 MRI1Q9BV20 369 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 DNAJC18Q9H819 358 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF287Q9HBT7 754 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 TCF7L1Q9HCS4 588 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 DIAPH3Q9NSV4 1193 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 REXO2Q9Y3B8 237 aaKnown RBP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 AFG3L2Q9Y4W6 797 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ECM29Q5VYK3 1845 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 GOLGA6L6A8MZA4 724 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 HTRA2O43464 458 aaPredicted RBP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ABLIM3O94929 683 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ITGB1P05556 798 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 SLC3A2P08195 630 aaKnown RBP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 CYP2D6P10635 497 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 SHMT1P34896 483 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 TDO2P48775 406 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 RAB27AP51159 221 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 CHN2P52757 468 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 LBX1P52954 281 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 NHLH2Q02577 135 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 SPP2Q13103 211 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 TARDBPQ13148 414 aaKnown RBP eCLIP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF529Q6P280 563 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 PDZD4Q76G19 769 aaPredicted RBP2.9□□□□□ -1.95
VPS13A-208ENST00000423463 DOK3Q7L591 496 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 NAPBQ9H115 298 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 CDH19Q9H159 772 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 TRPM5Q9NZQ8 1165 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 SLC45A1Q9Y2W3 748 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 IPPQ9Y573 584 aa2.9□□□□□ -1.95
VPS13A-208ENST00000423463 CYP2D7A0A087X1C5 515 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 A0A0D9SFI3 127 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 GRXCR1A8MXD5 290 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 BTBD19C9JJ37 291 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 NCR1O76036 304 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PRSS23O95084 383 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 GH2P01242 217 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DDCP20711 480 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TACR2P21452 398 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 NR4A1P22736 598 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 SLC6A2P23975 617 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CHMLP26374 656 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 USP14P54578 494 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 BACE1P56817 501 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FOXE3Q13461 319 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TUBA3CQ13748 450 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ARHGEF6Q15052 776 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 LSM12Q3MHD2 195 aaKnown RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DCAF17Q5H9S7 520 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 RABL3Q5HYI8 236 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM47AQ5JRC9 791 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FNDC7Q5VTL7 733 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TUBA3EQ6PEY2 450 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM180AQ6UWF9 173 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DBX2Q6ZNG2 339 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CCDC129Q6ZRS4 1044 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TMEM179Q6ZVK1 233 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 HTR3DQ70Z44 454 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FMNL3Q8IVF7 1028 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF444Q8N0Y2 327 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM43AQ8N2R8 423 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DCBLD1Q8N8Z6 715 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 COA7Q96BR5 231 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DYNLL2Q96FJ2 89 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TMX3Q96JJ7 454 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM227BQ96M60 508 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 AASDHPPTQ9NRN7 309 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TDP1Q9NUW8 608 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TMEM140Q9NV12 185 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FBXO34Q9NWN3 711 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TMOD4Q9NZQ9 345 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 IP6K2Q9UHH9 426 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CTNNA3Q9UI47 895 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ANAPC4Q9UJX5 808 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 USP15Q9Y4E8 981 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 HS3ST3A1Q9Y663 406 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CCDC171Q6TFL3 1326 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 MAST2Q6P0Q8 1798 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 DOCK2Q92608 1830 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TCRBV7S2A1N4TA0A589 114 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 LRRC14BA6NHZ5 514 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM171A2A8MVW0 826 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 AHRRA9YTQ3 701 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PDHXO00330 501 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TSPAN6O43657 245 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF202O95125 648 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 SNUPNO95149 360 aaKnown RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FSHBP01225 129 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FGAP02671 866 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 HSPD1P10809 573 aaKnown RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PCP11498 1178 aaKnown RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 HOXA7P31268 230 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 NT5C2P49902 561 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CLRN1P58418 232 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 RNASE9P60153 205 aaKnown RBP2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms