RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KHNYNO15037 678 aaKnown RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 NFATC1O95644 943 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 CST3P01034 146 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 TCF3P15923 654 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 GAP43P17677 238 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 GARTP22102 1010 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 PCSK1P29120 753 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 STAT6P42226 847 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 LHX1P48742 406 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 PGFP49763 221 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 RHBDF2Q6PJF5 856 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 DENND5BQ6ZUT9 1274 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 ELOA2Q8IYF1 753 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 GPD1LQ8N335 351 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 PHTF2Q8N3S3 785 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 CACTINQ8WUQ7 758 aaKnown RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 HMGB4Q8WW32 186 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 GATA6Q92908 595 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 FUBP3Q96I24 572 aaKnown RBP eCLIP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 SCNM1Q9BWG6 230 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 GZF1Q9H116 711 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 MAGEF1Q9HAY2 307 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 TMEM9BQ9NQ34 198 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 PANK4Q9NVE7 773 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 MAGEC2Q9UBF1 373 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 CDH9Q9ULB4 789 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 EXOC7Q9UPT5 735 aa13.75□□□□□ -0.21
LINC00339-202ENST00000416769 FASNP49327 2511 aaKnown RBP13.75□□□□□ -0.21
LINC00339-202ENST00000416769 CEP192Q8TEP8 1941 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 PLXND1Q9Y4D7 1925 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 HYAL3O43820 417 aaPredicted RBP13.74□□□□□ -0.21
LINC00339-202ENST00000416769 OLFM2O95897 454 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 MBD3O95983 291 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 OAS1P00973 400 aaKnown RBP13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SLFN14P0C7P3 912 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 WARSP23381 471 aaKnown RBP13.74□□□□□ -0.21
LINC00339-202ENST00000416769 ABCD1P33897 745 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 P2RY2P41231 377 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 KIR2DL1P43626 348 aaPredicted RBP13.74□□□□□ -0.21
LINC00339-202ENST00000416769 FAM193AP78312 1265 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SLC7A9P82251 487 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 TAF10Q12962 218 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 NFKBIBQ15653 356 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 TRIM61Q5EBN2 209 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 DAB2IPQ5VWQ8 1189 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SV2BQ7L1I2 683 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 MIB1Q86YT6 1006 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 CEP57L1Q8IYX8 460 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 ADGRG2Q8IZP9 1017 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 NAT16Q8N8M0 369 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 DHX58Q96C10 678 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 ZFRQ96KR1 1074 aaKnown RBP13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SPATA17Q96L03 361 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 MMS19Q96T76 1030 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 TTLL2Q9BWV7 592 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 ADAM33Q9BZ11 813 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 LRRC27Q9C0I9 530 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 CD93Q9NPY3 652 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 OLFML3Q9NRN5 406 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 TRPM5Q9NZQ8 1165 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SEL1LQ9UBV2 794 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 SERTAD1Q9UHV2 236 aa13.74□□□□□ -0.21
LINC00339-202ENST00000416769 PCDH15Q96QU1 1955 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 TCRBV21S2A2A0A5A6 115 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 ACTN4O43707 911 aaKnown RBP13.73□□□□□ -0.21
LINC00339-202ENST00000416769 KAT7O95251 611 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 ITPKAP23677 461 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 WASP42768 502 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 AMPD3Q01432 767 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 NR1H3Q13133 447 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 COL9A2Q14055 689 aaPredicted RBP13.73□□□□□ -0.21
LINC00339-202ENST00000416769 MAP7D1Q3KQU3 841 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 LY6G5CQ5SRR4 150 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 C4orf50Q6ZRC1 276 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 HS2ST1Q7LGA3 356 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 RDH13Q8NBN7 331 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 MYCBPAPQ8TBZ2 947 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 CCDC34Q96HJ3 373 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 ANKRD36BP1Q96IX9 119 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 B3GNT5Q9BYG0 378 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 KBTBD4Q9NVX7 518 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 KLK13Q9UKR3 277 aa13.73□□□□□ -0.21
LINC00339-202ENST00000416769 COCHO43405 550 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 LDHAP00338 332 aaKnown RBP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 DLATP10515 647 aaKnown RBP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 MBL2P11226 248 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 ENGP17813 658 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 CASP1P29466 404 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 SKOR2Q2VWA4 1001 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 VSTM1Q6UX27 236 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 TRAPPC11Q7Z392 1133 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 KDF1Q8NAX2 398 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 OR6B3Q8NGW1 331 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 SCAMP5Q8TAC9 235 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 SPATA18Q8TC71 538 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 ZNF516Q92618 1163 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 KCNK16Q96T55 309 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 PNKPQ96T60 521 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms