RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 RIN3Q8TB24 985 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 E2F7Q96AV8 911 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 SRPK1Q96SB4 655 aaKnown RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 TELO2Q9Y4R8 837 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 AK5Q9Y6K8 562 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 CFBP00751 764 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 KRT1P04264 644 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 TCF4P15884 667 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 NSFP46459 744 aaKnown RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 STT3AP46977 705 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 ALDH1A3P47895 512 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 NT5C2P49902 561 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 CLEC16AQ2KHT3 1053 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 KBTBD12Q3ZCT8 623 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 CIAPIN1Q6FI81 312 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 MFSD7Q6UXD7 560 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 CRLF3Q8IUI8 442 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 PPP1R14CQ8TAE6 165 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 FNDC8Q8TC99 324 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 SHC3Q92529 594 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 DCUN1D1Q96GG9 259 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 ACSS3Q9H6R3 686 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 TOPORSQ9NS56 1045 aaPredicted RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 MAD1L1Q9Y6D9 718 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 PLIN4Q96Q06 1357 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 IQANK1A0A1B0GTG1 560 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 PROSCO94903 275 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 POLR2MP0CAP2 368 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 ALOX15P16050 662 aaPredicted RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 ETV4P43268 484 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 ATXN3P54252 364 aaPredicted RBP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 YWHAGP61981 247 aaKnown RBP eCLIP15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 AMIGO2Q86SJ2 522 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 FIZ1Q96SL8 496 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 RAB20Q9NX57 234 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 WDR37Q9Y2I8 494 aa15.3■□□□□ 0.04
NCKIPSD-204ENST00000416649 NFKBIEO00221 500 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 MTTPP55157 894 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 KYAT3Q6YP21 454 aaKnown RBP15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 PATL1Q86TB9 770 aaKnown RBP15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 RSPH3Q86UC2 560 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 CHSY1Q86X52 802 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 NUDCD3Q8IVD9 361 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 DEFB107AQ8IZN7 70 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 NUP93Q8N1F7 819 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 ALLCQ8N6M5 410 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 GSDMBQ8TAX9 411 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 MZB1Q8WU39 189 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 ABHD8Q96I13 439 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 GMLQ99445 158 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 CCDC106Q9BWC9 280 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 SENP6Q9GZR1 1112 aaPredicted RBP15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 HOMER2Q9NSB8 354 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 NYAP2Q9P242 653 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 STAMBPO95630 424 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 NELFEP18615 380 aaKnown RBP15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 CD97P48960 835 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 PDK1Q15118 436 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 CCDC92Q53HC0 331 aaPredicted RBP15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 ADGRG6Q86SQ4 1221 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 SMYD1Q8NB12 490 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 LENG9Q96B70 501 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 Q9H521 79 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 MYOZ2Q9NPC6 264 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 AP4B1Q9Y6B7 739 aa15.29■□□□□ 0.04
NCKIPSD-204ENST00000416649 A0A1B0GTW7 788 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 TRIM49D1C9J1S8 452 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 MEIS2O14770 477 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 XPO1O14980 1071 aaKnown RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 ENTPD3O75355 529 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 PDGFRBP09619 1106 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 ZFXP17010 805 aaPredicted RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 CPOXP36551 454 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 VCPP55072 806 aaKnown RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 BASP1P80723 227 aaKnown RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 C1orf220Q5T0J3 134 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 C6orf52Q5T4I8 152 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 CPXCR1Q8N123 301 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 GIPC3Q8TF64 312 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 VTI1AQ96AJ9 217 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 NT5C1BQ96P26 610 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 TUT1Q9H6E5 874 aaKnown RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 PPCSQ9HAB8 311 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 IFT122Q9HBG6 1241 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 SHOC2Q9UQ13 582 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 POMPQ9Y244 141 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 CNTNAP1P78357 1384 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 DNAJA2O60884 412 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 TOM1L1O75674 476 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 CIITAP33076 1130 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 FBXO11Q86XK2 927 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 PPM1NQ8N819 430 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 XXYLT1Q8NBI6 393 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 SLC35B4Q969S0 331 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 MAML3Q96JK9 1138 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 ZFRQ96KR1 1074 aaKnown RBP15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 SENP7Q9BQF6 1050 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 MRIQ9BWK5 157 aa15.28■□□□□ 0.04
NCKIPSD-204ENST00000416649 OXCT2Q9BYC2 517 aaPredicted RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms