RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CDH9Q9ULB4 789 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 TRIM17Q9Y577 477 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 USP2O75604 605 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SPATA31C1P0DKV0 1188 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 MBL2P11226 248 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 GFAPP14136 432 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 HNRNPH3P31942 346 aaKnown RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 MRPS25P82663 173 aaKnown RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SYTL3Q4VX76 610 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 RETSATQ6NUM9 610 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 FAR2Q96K12 515 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 GPR63Q9BZJ6 419 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PRKD2Q9BZL6 878 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 FIS1Q9Y3D6 152 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PTCH2Q9Y6C5 1203 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 LTBP4Q8N2S1 1624 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 STX7O15400 261 aaKnown RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 XYLBO75191 536 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 CSPG5O95196 566 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 CTCFP49711 727 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SF3A3Q12874 501 aaKnown RBP eCLIP12.41□□□□□ -0.425e-9■■□□□ 12.7
PTPRF-205ENST00000414879 STX3Q13277 289 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 FAM9CQ8IZT9 166 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 FAM71DQ8N9W8 422 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 ANKRD7Q92527 254 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 AGAP3Q96P47 875 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 YY1AP1Q9H869 796 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 ENTPD7Q9NQZ7 604 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 CDY2AQ9Y6F7 541 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 CDY1Q9Y6F8 540 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 FZD9O00144 591 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 FARP2O94887 1054 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 YY1P25490 414 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 CASP2P42575 452 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 TMTC4Q5T4D3 741 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 ANKMY2Q8IV38 441 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 TATDN2Q93075 761 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 SH3KBP1Q96B97 665 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 SARS2Q9NP81 518 aaKnown RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 PSD3Q9NYI0 1048 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 MOSPD1Q9UJG1 213 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 ATP11BQ9Y2G3 1177 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 OPHN1O60890 802 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 RECQL4O94761 1208 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 CRTAMO95727 393 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 GHRP10912 638 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 YWHAQP27348 245 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 DMTNQ08495 405 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 FAM83EQ2M2I3 478 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 SH3D19Q5HYK7 790 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 BEND6Q5SZJ8 279 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 SUGP1Q8IWZ8 645 aaKnown RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 MTMR8Q96EF0 704 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 MFSD14AQ96MC6 490 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 ADGRE3Q9BY15 652 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 SLC13A1Q9BZW2 595 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 PCDHGB4Q9UN71 923 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 A0A0G2JLL6 359 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 ERI2A8K979 691 aaKnown RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 VCPP55072 806 aaKnown RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 NAB1Q13506 487 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 FAM133BQ5BKY9 247 aaKnown RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 PRRT2Q7Z6L0 340 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-205ENST00000414879 CXorf38Q8TB03 319 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 FGD4Q96M96 766 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 EPN3Q9H201 632 aa12.4□□□□□ -0.42
PTPRF-205ENST00000414879 ASTN1O14525 1302 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 TBKBP1A7MCY6 615 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 KLHL2O95198 593 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 MYL2P10916 166 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 CAPSQ13938 189 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 SMTNL2Q2TAL5 461 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 ZACNQ401N2 412 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 CCDC149Q6ZUS6 474 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 GSPT2Q8IYD1 628 aaKnown RBP12.4□□□□□ -0.43
PTPRF-205ENST00000414879 FAM71AQ8IYT1 594 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 IPMKQ8NFU5 416 aa12.4□□□□□ -0.43
PTPRF-205ENST00000414879 PAPPAQ13219 1627 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CAPN15O75808 1086 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 PPM1AP35813 382 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 MAP3K7CLP57077 242 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TWF1Q12792 350 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SLC12A1Q13621 1099 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 BTG3Q14201 252 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TAF11Q15544 211 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SPRYD7Q5W111 196 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 FAM47EQ6ZV65 393 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SPATA21Q7Z572 469 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 KATNAL2Q8IYT4 538 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 C9orf72Q96LT7 481 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 POPDC2Q9HBU9 364 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ABCC13Q9NSE7 274 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 DCDC2Q9UHG0 476 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CHMP2BQ9UQN3 213 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 MTO1Q9Y2Z2 717 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CAPN6Q9Y6Q1 641 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ASTN2O75129 1339 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ANKRD63C9JTQ0 380 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 GLRA3O75311 464 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 MICAL2O94851 1124 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms