RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 RALAP11233 206 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 TCF3P15923 654 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 HDCP19113 662 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 KRT9P35527 623 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 ZNF445P59923 1031 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 POLR2FP61218 127 aaKnown RBP15.42■□□□□ 0.06
LIMS1-206ENST00000414829 PKDCCQ504Y2 493 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 ARHGAP29Q52LW3 1261 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 RAB41Q5JT25 222 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 STXBP5Q5T5C0 1151 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 TXNDC8Q6A555 127 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 CC2D1AQ6P1N0 951 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-206ENST00000414829 KLHDC10Q6PID8 442 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 C1orf228Q6PIY5 440 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 APTXQ7Z2E3 356 aaKnown RBP15.42■□□□□ 0.06
LIMS1-206ENST00000414829 CACNA2D4Q7Z3S7 1137 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 MFSD6LQ8IWD5 586 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 SCAMP5Q8TAC9 235 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 BPIFB1Q8TDL5 484 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 TFAP2BQ92481 460 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 GOLGA1Q92805 767 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 IRF7Q92985 503 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 MSANTD3Q96H12 275 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 ZSWIM3Q96MP5 696 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 NAA15Q9BXJ9 866 aaKnown RBP15.42■□□□□ 0.06
LIMS1-206ENST00000414829 SLC46A2Q9BY10 475 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 GANQ9H2C0 597 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 TRPV5Q9NQA5 729 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 CNGB3Q9NQW8 809 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 CLIC5Q9NZA1 410 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 GMIPQ9P107 970 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 WNT16Q9UBV4 365 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 PCDHGC3Q9UN70 934 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 USP3Q9Y6I4 520 aa15.42■□□□□ 0.06
LIMS1-206ENST00000414829 A0A1B0GTH6 734 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 HEPACAM2A8MVW5 462 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 RNF225M0QZC1 329 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-206ENST00000414829 ZNF263O14978 683 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 CYP26A1O43174 497 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 TLR5O60602 858 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 OLFM2O95897 454 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 ZBED1O96006 694 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 ZDHHC11BP0C7U3 371 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 STAT1P42224 750 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 TKTL1P51854 596 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 SLC7A9P82251 487 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 FCHO2Q0JRZ9 810 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 TANGO2Q6ICL3 276 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 TRIM67Q6ZTA4 783 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 ZNF677Q86XU0 584 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 MSANTD4Q8NCY6 345 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 SLC35F5Q8WV83 523 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 ZNF606Q8WXB4 792 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 RSAD2Q8WXG1 361 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 IRGQQ8WZA9 623 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 SECISBP2LQ93073 1101 aaKnown RBP15.41■□□□□ 0.06
LIMS1-206ENST00000414829 SHDQ96IW2 340 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 MIS12Q9H081 205 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 LHX5Q9H2C1 402 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 PDCL3Q9H2J4 239 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 BRD9Q9H8M2 597 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 MYO6Q9UM54 1294 aa15.41■□□□□ 0.06
LIMS1-206ENST00000414829 TCF20Q9UGU0 1960 aaKnown RBP15.41■□□□□ 0.06
LIMS1-206ENST00000414829 C5orf42Q9H799 3197 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 FOXN3O00409 490 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-206ENST00000414829 CHADO15335 359 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 CBFA2T2O43439 604 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 PRAMEF12O95522 483 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 LSM8O95777 96 aaKnown RBP15.4■□□□□ 0.06
LIMS1-206ENST00000414829 SOX5P35711 763 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 APBA1Q02410 837 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 USP4Q13107 963 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 VITQ6UXI7 678 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 GPRIN1Q7Z2K8 1008 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 ZNF276Q8N554 614 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 UBA3Q8TBC4 463 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 IPO4Q8TEX9 1081 aaKnown RBP15.4■□□□□ 0.06
LIMS1-206ENST00000414829 OLA1Q9NTK5 396 aaKnown RBP15.4■□□□□ 0.06
LIMS1-206ENST00000414829 NAGPAQ9UK23 515 aa15.4■□□□□ 0.06
LIMS1-206ENST00000414829 C2orf78A6NCI8 922 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 NRG2O14511 850 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 SLC9A3R1O14745 358 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 MBL2P11226 248 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 GLULP15104 373 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 CYP11B1P15538 503 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 ATP5C1P36542 298 aaKnown RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 VIPR2P41587 438 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 UBASH3AP57075 661 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 FANCCQ00597 558 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 PRKCQQ04759 706 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 ADIGQ0VDE8 80 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 PDGFRLQ15198 375 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 TMEM31Q5JXX7 168 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 PM20D1Q6GTS8 502 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 DPY19L2P1Q6NXN4 242 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 ARL14EPQ8N8R7 260 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 CSGALNACT1Q8TDX6 532 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 USP13Q92995 863 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-206ENST00000414829 EXOC4Q96A65 974 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 NUP58Q9BVL2 599 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms