RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KMOO15229 486 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 MTTPP55157 894 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 COASYQ13057 564 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 TAF5Q15542 800 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 NEK5Q6P3R8 708 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 RAB11FIP2Q7L804 512 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 OSBPL11Q9BXB4 747 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 PNPLA8Q9NP80 782 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 FAM50BQ9Y247 325 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 STARD13Q9Y3M8 1113 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 GPR162Q16538 588 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 SH2D3CQ8N5H7 860 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 PPP1R10Q96QC0 940 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 BHLHE41Q9C0J9 482 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 PRPF3O43395 683 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 FKBP6O75344 327 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 MYLPFQ96A32 169 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 MCEEQ96PE7 176 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 CINPQ9BW66 212 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 TRAPPC8Q9Y2L5 1435 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 RNF123Q5XPI4 1314 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 MDM4O15151 490 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF806P0C7X5 589 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 SSTR3P32745 418 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 FAM160B2Q86V87 743 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 IPMKQ8NFU5 416 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 XPR1Q9UBH6 696 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 FBXO40Q9UH90 709 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 GNA13Q14344 377 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 GLYCTKQ8IVS8 523 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 OR7A2PQ8NGA2 310 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 POLR3FQ9H1D9 316 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 VCPKMTQ9H867 229 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 NMRK2Q9NPI5 230 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC16A2P36021 539 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 ALDH3A2P51648 485 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 B3GNT6Q6ZMB0 384 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 FAUP35544 74 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 XRCC4Q13426 336 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 NR1D2Q14995 579 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 SKIV2LQ15477 1246 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 KCTD21Q4G0X4 260 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 DAW1Q8N136 415 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 SPIRE2Q8WWL2 714 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 KIF12Q96FN5 646 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 MAP3K19Q56UN5 1328 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 CACNA1FO60840 1977 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 PSIP1O75475 530 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 OSCP1Q8WVF1 389 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF302Q9NR11 478 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 NCAPD2Q15021 1401 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 A0A087WWV3 80 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 ARHGEF33A8MVX0 844 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 OR7A10O76100 309 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 ATP1A3P13637 1013 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 AVPR1AP37288 418 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 PTGES3Q15185 160 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 BARGINQ6ZT62 677 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 S100ZQ8WXG8 99 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 CHCHD6Q9BRQ6 235 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 TAGLN3Q9UI15 199 aa13.74□□□□□ -0.21
CCDC88A-204ENST00000413716 XDHP47989 1333 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 TMEM114B3SHH9 223 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HPCAL1P37235 193 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 FIG4Q92562 907 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 MS4A14Q96JA4 679 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 COX4I2Q96KJ9 171 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 NLNQ9BYT8 704 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SPEF1Q9Y4P9 236 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 AXIN1O15169 862 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ATF4P18848 351 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ATP5F1P24539 256 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 PTGS2P35354 604 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SCTRP47872 440 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 GJA8P48165 433 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 STK4Q13043 487 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 MROH9Q5TGP6 573 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 R3HCC1LQ7Z5L2 792 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 TFB1MQ8WVM0 346 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 INTS2Q9H0H0 1204 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 DYRK1BQ9Y463 629 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HIST1H2ABP04908 130 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HIST3H2AQ7L7L0 130 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SMYD1Q8NB12 490 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HIST1H2ACQ93077 130 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SERAC1Q96JX3 654 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SH3BP1Q9Y3L3 701 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HAT1O14929 419 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 HS6ST1O60243 411 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF432O94892 652 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 CASP5P51878 434 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 KRT24Q2M2I5 525 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 DENND1BQ6P3S1 775 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 PIK3C3Q8NEB9 887 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 C9orf16Q9BUW7 83 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF804BA4D1E1 1349 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 UBE2Q1Q7Z7E8 422 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms