RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 EMC2Q15006 297 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TARBP2Q15633 366 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC6Q16204 474 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SUPT20HL1Q3ZLR7 823 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ANKRD22Q5VYY1 191 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ACAD11Q709F0 780 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RHPN2Q8IUC4 686 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 VPS52Q8N1B4 723 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TTC39CQ8N584 583 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ARFGAP1Q8N6T3 406 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 AGBL3Q8NEM8 1001 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RSAD2Q8WXG1 361 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 C12orf42Q96LP6 360 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 OLFM3Q96PB7 478 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 MCEEQ96PE7 176 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 MIS12Q9H081 205 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ASCC2Q9H1I8 757 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 FBXO28Q9NVF7 368 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 STK32BQ9NY57 414 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 GABBR1Q9UBS5 961 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC9A2Q9UBY0 812 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 BCS1LQ9Y276 419 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TTLL3Q9Y4R7 772 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SDR42E2A6NKP2 422 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 BTBD19C9JJ37 291 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 I3L4J1 428 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MCF2LO15068 1137 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 B4GALT4O60513 344 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SMIM24O75264 130 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SKAP2O75563 359 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 STAU1O95793 577 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ERBB2P04626 1255 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CAPNS1P04632 268 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 INHBAP08476 426 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ANPEPP15144 967 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TCF4P15884 667 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TPSB2P20231 275 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PROZP22891 400 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 L1CAMP32004 1257 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CPOXP36551 454 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PGM1P36871 562 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PRKCEQ02156 737 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 DSG1Q02413 1049 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 FRG1Q14331 258 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PDK2Q15119 407 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TPSAB1Q15661 275 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ATP13A4Q4VNC1 1196 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 STEAP4Q687X5 459 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 LLGL2Q6P1M3 1020 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PGM2L1Q6PCE3 622 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 DCUN1D2Q6PH85 259 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SCUBE1Q8IWY4 988 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 REM2Q8IYK8 340 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 NSUN6Q8TEA1 469 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 FAF2Q96CS3 445 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SERAC1Q96JX3 654 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 BTBD9Q96Q07 612 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM167BQ9BTA0 163 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 KIFC3Q9BVG8 833 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 GCOM2Q9BZD3 368 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PDZD7Q9H5P4 517 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 JPH1Q9HDC5 661 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CPSF2Q9P2I0 782 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 XPO7Q9UIA9 1087 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ITGA11Q9UKX5 1188 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM150BA6NC51 233 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SPDYE5A6NIY4 337 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM159BA6NKW6 160 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 H0YIN7 160 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 BUD23O43709 281 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ADCY3O60266 1144 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CST8O60676 142 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 RFPL1O75677 317 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT36O76013 467 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ALDH1A2O94788 518 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 KLHL2O95198 593 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PENKP01210 267 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 NR3C2P08235 984 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 PABPC4LP0CB38 370 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MYL2P10916 166 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MLNP12872 115 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TUBP50607 506 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CDK7P50613 346 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 HK2P52789 917 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 CACNA2D1P54289 1103 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MYL6P60660 151 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ITGA9Q13797 1035 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 RCN2Q14257 317 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 INSCQ1MX18 579 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 HSF5Q4G112 596 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MAP3K21Q5TCX8 1036 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ARHGEF16Q5VV41 709 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TXNRD3NBQ6F5E7 133 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 LRRC6Q86X45 466 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 WDR60Q8WVS4 1066 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SRPK1Q96SB4 655 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TBCBQ99426 244 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 ECSITQ9BQ95 431 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 MSTO1Q9BUK6 570 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms