RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 IGKV1D-42A0A075B6H8 117 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 IGKV3D-11A0A0A0MRZ8 115 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 LOC100653049A0A140TA62 436 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 ZNF840PA6NDX5 716 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 A6NNC1 897 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 B4DXG7 233 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 E9PQ18 207 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 UBE2Q2LH0YL09 131 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 SLC33A1O00400 549 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 PPP6R2O75170 966 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 KRT34O76011 436 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 EDN1P05305 212 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 POU2F2P09086 479 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 HAPLN1P10915 354 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 PIK3CGP48736 1102 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 ZNF133P52736 654 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 CLDN6P56747 220 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 LINC00315P59091 139 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 CIRBPQ14011 172 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 PABPC1LQ4VXU2 614 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 TNNI3KQ59H18 835 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 C9orf129Q5T035 196 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 BTBD8Q5XKL5 378 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 ANKS6Q68DC2 871 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 C9orf139Q6ZV77 190 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 INTS8Q75QN2 995 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 GRINAQ7Z429 371 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 WWC1Q8IX03 1113 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 SLC39A11Q8N1S5 342 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 C15orf53Q8NAA6 179 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 NPLOC4Q8TAT6 608 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 CYP2W1Q8TAV3 490 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 RASGRP4Q8TDF6 673 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 U2AF1L4Q8WU68 220 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 GTF3C2Q8WUA4 911 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 GATAD2BQ8WXI9 593 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 RFKQ969G6 155 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 ZBTB45Q96K62 511 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 WRAP53Q9BUR4 548 aaKnown RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 GPR83Q9NYM4 423 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 CGGBP1Q9UFW8 167 aaPredicted RBP-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 CRLS1Q9UJA2 301 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 STRIP2Q9ULQ0 834 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 MYO15AQ9UKN7 3530 aa-1.18□□□□□ -2.6
RNU4-88P-201ENST00000411220 LAMB4A4D0S4 1761 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 DIDO1Q9BTC0 2240 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 AATKQ6ZMQ8 1374 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 PLXNB1O43157 2135 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ANK3Q12955 4377 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 TMEM272A0A1B0GTI8 110 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 CCDC78A2IDD5 438 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 A8MWP4 228 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 CXorf49A8MYA2 514 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 USP17L23D6RBM5 183 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 SLC22A3O75751 556 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 KRT14P02533 472 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 TP53P04637 393 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 PROS1P07225 676 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 PNMTP11086 282 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 NME1P15531 152 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 PCYT1AP49585 367 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 NXPH1P58417 271 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 LYZP61626 148 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 B4GALNT1Q00973 533 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 RBPJQ06330 500 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 SLC39A14Q15043 492 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 MAP3K11Q16584 847 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 SBK1Q52WX2 424 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ESRP1Q6NXG1 681 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 TRIM72Q6ZMU5 477 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ZNF551Q7Z340 670 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ABI3BPQ7Z7G0 1075 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 MMAAQ8IVH4 418 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 POC1AQ8NBT0 407 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 OSR1Q8TAX0 266 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ZNF419Q96HQ0 510 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 ABHD8Q96I13 439 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 FUBP3Q96I24 572 aaKnown RBP eCLIP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 BOCQ9BWV1 1114 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 NIF3L1Q9GZT8 377 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 MAGEH1Q9H213 219 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 POFUT1Q9H488 388 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 INTS7Q9NVH2 962 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 RIC8BQ9NVN3 520 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 THYN1Q9P016 225 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 DNAJB11Q9UBS4 358 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 USP25Q9UHP3 1055 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 R3HDM2Q9Y2K5 976 aaKnown RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 MAGED1Q9Y5V3 778 aaPredicted RBP-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 KIF25-AS1Q9Y6Z4 181 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 SRCAPQ6ZRS2 3230 aa-1.19□□□□□ -2.6
RNU4-88P-201ENST00000411220 MYO7AQ13402 2215 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 KLHL33A6NCF5 533 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 TMEM8BA6NDV4 472 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 CBY3A6NI87 242 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 POM121CA8CG34 1229 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 H7C1Q1 480 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 H7C423 109 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 SPINK1P00995 79 aa-1.2□□□□□ -2.6
RNU4-88P-201ENST00000411220 ACP2P11117 423 aa-1.2□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms