RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 OLFM2O95897 454 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 DLATP10515 647 aaKnown RBP30.3■■■□□ 2.44
HMGB1-205ENST00000399494 PTPN1P18031 435 aaKnown RBP30.3■■■□□ 2.44
HMGB1-205ENST00000399494 TNNI1P19237 187 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 SEC13P55735 322 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 RNF43Q68DV7 783 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 FILIP1Q7Z7B0 1213 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 GUF1Q8N442 669 aaKnown RBP30.3■■■□□ 2.44
HMGB1-205ENST00000399494 TMEM30AQ9NV96 361 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 MAP1BP46821 2468 aaKnown RBP30.3■■■□□ 2.44
HMGB1-205ENST00000399494 PTPRDP23468 1912 aa30.3■■■□□ 2.44
HMGB1-205ENST00000399494 CYP17A1P05093 508 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 CACNA2D1P54289 1103 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 PSMD6Q15008 389 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 USP39Q53GS9 565 aaKnown RBP30.29■■■□□ 2.44
HMGB1-205ENST00000399494 RASSF3Q86WH2 238 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 SMYD4Q8IYR2 804 aaPredicted RBP30.29■■■□□ 2.44
HMGB1-205ENST00000399494 OR6B3Q8NGW1 331 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 ZNF516Q92618 1163 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 GBP4Q96PP9 640 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 CGRRF1Q99675 332 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 TPSD1Q9BZJ3 242 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 MMP17Q9ULZ9 603 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 CPQQ9Y646 472 aa30.29■■■□□ 2.44
HMGB1-205ENST00000399494 OAS1P00973 400 aaKnown RBP30.28■■■□□ 2.44
HMGB1-205ENST00000399494 NR3C1P04150 777 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 GBP1P32455 592 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 TAF10Q12962 218 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 DHCR24Q15392 516 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 WDR72Q3MJ13 1102 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 ZNF658Q5TYW1 1059 aaPredicted RBP30.28■■■□□ 2.44
HMGB1-205ENST00000399494 TDRD10Q5VZ19 366 aaKnown RBP30.28■■■□□ 2.44
HMGB1-205ENST00000399494 CLEC17AQ6ZS10 378 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 CCDC33Q8N5R6 958 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 FNBP1Q96RU3 617 aa30.28■■■□□ 2.44
HMGB1-205ENST00000399494 GTPBP4Q9BZE4 634 aaKnown RBP30.28■■■□□ 2.44
HMGB1-205ENST00000399494 ABL1P00519 1130 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 SLC6A11P48066 632 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 MRPS21P82921 87 aaKnown RBP30.27■■■□□ 2.44
HMGB1-205ENST00000399494 SHC2P98077 582 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 CYP24A1Q07973 514 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 PMS2CLQ68D20 193 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 RHBDF2Q6PJF5 856 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 CCDC127Q96BQ5 260 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 GZF1Q9H116 711 aaPredicted RBP30.27■■■□□ 2.44
HMGB1-205ENST00000399494 DPEP3Q9H4B8 488 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 SMPD4Q9NXE4 827 aa30.27■■■□□ 2.44
HMGB1-205ENST00000399494 SLC9A3R1O14745 358 aaPredicted RBP30.26■■■□□ 2.43
HMGB1-205ENST00000399494 MESP2Q0VG99 397 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 CRY1Q16526 586 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 C11orf74Q86VG3 221 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 SLC9A9Q8IVB4 645 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 SPATA20Q8TB22 786 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 CNOT6LQ96LI5 555 aaKnown RBP30.26■■■□□ 2.43
HMGB1-205ENST00000399494 EDEM2Q9BV94 578 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 B3GNT5Q9BYG0 378 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 ZNF518BQ9C0D4 1074 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 TRAF3IP3Q9Y228 551 aa30.26■■■□□ 2.43
HMGB1-205ENST00000399494 A0A0A0MRY4 1105 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 CLDN5O00501 218 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 STAU1O95793 577 aaKnown RBP30.25■■■□□ 2.43
HMGB1-205ENST00000399494 TNNC1P63316 161 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 CEP135Q66GS9 1140 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 ANO7Q6IWH7 933 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 TMEM92Q6UXU6 159 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 SFTPA1Q8IWL2 248 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 SLITRK1Q96PX8 696 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 PNKPQ96T60 521 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 ELOVL4Q9GZR5 314 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 CFAP97Q9P2B7 532 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 FRMD4BQ9Y2L6 1034 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 ABCA7Q8IZY2 2146 aa30.25■■■□□ 2.43
HMGB1-205ENST00000399494 C4orf47A7E2U8 309 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 SCAMP3O14828 347 aaKnown RBP30.24■■■□□ 2.43
HMGB1-205ENST00000399494 CHRM1P11229 460 aaPredicted RBP30.24■■■□□ 2.43
HMGB1-205ENST00000399494 HNRNPLP14866 589 aaKnown RBP eCLIP30.24■■■□□ 2.432e-8■□□□□ 9.1
HMGB1-205ENST00000399494 BCKDHBP21953 392 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 MYL6P60660 151 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 ISM2Q6H9L7 571 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 MDGA1Q8NFP4 955 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 XYLT2Q9H1B5 865 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 DMAC2Q9NW81 257 aa30.24■■■□□ 2.43
HMGB1-205ENST00000399494 A8MXQ7 604 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 NR2F2P24468 414 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 RPL13P26373 211 aaKnown RBP30.23■■■□□ 2.43
HMGB1-205ENST00000399494 EIF2DP41214 584 aaKnown RBP30.23■■■□□ 2.43
HMGB1-205ENST00000399494 PRCPP42785 496 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 NUP93Q8N1F7 819 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 IL17RCQ8NAC3 791 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 B3GALNT2Q8NCR0 500 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 OLIG1Q8TAK6 271 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 NXF1Q9UBU9 619 aaKnown RBP30.23■■■□□ 2.43
HMGB1-205ENST00000399494 MAN1B1Q9UKM7 699 aa30.23■■■□□ 2.43
HMGB1-205ENST00000399494 LNP1A1A4G5 178 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 MBL2P11226 248 aaPredicted RBP30.22■■■□□ 2.43
HMGB1-205ENST00000399494 YWHAQP27348 245 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 ATICP31939 592 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 TRPC3Q13507 836 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 STIM1Q13586 685 aa30.22■■■□□ 2.43
HMGB1-205ENST00000399494 EMC10Q5UCC4 262 aa30.22■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms