RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SNRNP35Q16560 246 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 SBK1Q52WX2 424 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 COBLL1Q53SF7 1204 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 FBXW8Q8N3Y1 598 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 SMYD1Q8NB12 490 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 LXNQ9BS40 222 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PCDHB2Q9Y5E7 798 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PIK3C2BO00750 1634 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 TESPA1A2RU30 521 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ECE2O60344 883 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 BCAR1P56945 870 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 KLHL35Q6PF15 583 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ZCCHC7Q8N3Z6 543 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PIWIL2Q8TC59 973 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 LRRC15Q8TF66 581 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 CELF1Q92879 486 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 EFCAB1Q9HAE3 211 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ZHX2Q9Y6X8 837 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 FRMPD4Q14CM0 1322 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 DENND3A2RUS2 1198 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 GOLGA8TH3BQL2 631 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF862O60290 1169 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 FOXD2O60548 495 aaPredicted RBP9.65□□□□□ -0.87
COL28A1-201ENST00000399429 APOA1P02647 267 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 CALB1P05937 261 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 GLRA2P23416 452 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 XIAPP98170 497 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 SPIDRQ14159 915 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 TFDP2Q14188 446 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 PDCD4Q53EL6 469 aaKnown RBP9.65□□□□□ -0.87
COL28A1-201ENST00000399429 SPDYAQ5MJ70 313 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 TAS2R42Q7RTR8 314 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 NUP93Q8N1F7 819 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 MYO1HQ8N1T3 1032 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 FEZF2Q8TBJ5 459 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 EPS8L1Q8TE68 723 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 ZC3H12CQ9C0D7 883 aaKnown RBP9.65□□□□□ -0.87
COL28A1-201ENST00000399429 NYXQ9GZU5 481 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 POLR1BQ9H9Y6 1135 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 TRPC7Q9HCX4 862 aa9.65□□□□□ -0.87
COL28A1-201ENST00000399429 PXDNQ92626 1479 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 TMEM247A6NEH6 219 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PSTPIP1O43586 416 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SERPINA6P08185 405 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 GFAPP14136 432 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SERPINB10P48595 397 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 MOGSQ13724 837 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 LDLRAP1Q5SW96 308 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 LLGL2Q6P1M3 1020 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 TRAF7Q6Q0C0 670 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 EXD1Q8NHP7 514 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DEPTORQ8TB45 409 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SEC14L1Q92503 715 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PRR11Q96HE9 360 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 MTG1Q9BT17 334 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 NACA2Q9H009 215 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 MAF1Q9H063 256 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DHX35Q9H5Z1 703 aaKnown RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DKK3Q9UBP4 350 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SSX2IPQ9Y2D8 614 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PCDHGA4Q9Y5G9 962 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SPATA31A3Q5VYP0 1347 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CYB561D2O14569 222 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SPAG6O75602 509 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 LYPLA1O75608 230 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PDGFRBP09619 1106 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 RALBP11234 206 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 FGFR2P21802 821 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 ME2P23368 584 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 HALP42357 657 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 AP3B2Q13367 1082 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SLC12A1Q13621 1099 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 SYDE2Q5VT97 1194 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 OR6B2Q6IFH4 312 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PDCD6IPQ8WUM4 868 aaKnown RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM15Q9C019 465 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 JMJD4Q9H9V9 463 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CDH22Q9UJ99 828 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 UBE4BO95155 1302 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 ESYT2A0FGR8 921 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 EIF3DO15371 548 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DDHD2O94830 711 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 P4HBP07237 508 aaKnown RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 DLG4P78352 724 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CCDC153Q494R4 210 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 TFDP3Q5H9I0 405 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 HABP4Q5JVS0 413 aaKnown RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 RSBN1Q5VWQ0 802 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CIAPIN1Q6FI81 312 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CBWD2Q8IUF1 395 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CLEC4FQ8N1N0 589 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 FAM47BQ8NA70 645 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 CEP19Q96LK0 163 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 EPB41L4BQ9H329 900 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 C6orf203Q9P0P8 240 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-201ENST00000399429 PSMD13Q9UNM6 376 aa9.64□□□□□ -0.87
COL28A1-201ENST00000399429 TMEM191BP0C7N4 346 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 STT3AP46977 705 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 PRELPP51888 382 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms