RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 GMNCA6NCL1 334 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 H0YGN5 161 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 ERBB2P04626 1255 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 TYMPP19971 482 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 ALDH7A1P49419 539 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 ZNF844Q08AG5 666 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 PPIGQ13427 754 aaKnown RBP eCLIP13.05□□□□□ -0.32
CIITA-202ENST00000381835 MAMLD1Q13495 774 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 FAM171A1Q5VUB5 890 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 PMF1Q6P1K2 205 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 PEX26Q7Z412 305 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 TMEM173Q86WV6 379 aaPredicted RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 SYCE1Q8N0S2 351 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 THEM5Q8N1Q8 247 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 B3GALT6Q96L58 329 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 TMEM209Q96SK2 561 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 NCAPGQ9BPX3 1015 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 ACBD6Q9BR61 282 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 GPR62Q9BZJ7 368 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 NEUROG2Q9H2A3 272 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 MRPL47Q9HD33 250 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 NFS1Q9Y697 457 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 PTPRSQ13332 1948 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 GOLGA8SH3BPF8 625 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 CCDC188H7C350 402 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 BAIAP3O94812 1187 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 FGBP02675 491 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 BCAT1P54687 386 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 HADHBP55084 474 aaKnown RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 ACTN3Q08043 901 aaPredicted RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 BST2Q10589 180 aaKnown RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 TCEAL1Q15170 157 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 PLEKHA7Q6IQ23 1121 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 DNAJC24Q6P3W2 148 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 OR10T2Q8NGX3 314 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 PCED1BQ96HM7 432 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 HNRNPABQ99729 332 aaKnown RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 TMEM175Q9BSA9 504 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 PARVAQ9NVD7 372 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 STRIP2Q9ULQ0 834 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 SCINQ9Y6U3 715 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 E5RJQ4 531 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 MTA2O94776 668 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 MTMR3Q13615 1198 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 BTG3Q14201 252 aaPredicted RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 INTS6LQ5JSJ4 861 aaKnown RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 FUT10Q6P4F1 479 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 PAQR9Q6ZVX9 377 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 SLFN11Q7Z7L1 901 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 SPATA18Q8TC71 538 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 SLC35F5Q8WV83 523 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 ZNF689Q96CS4 500 aaPredicted RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 CWH43Q9H720 699 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 AMACRQ9UHK6 382 aa13.04□□□□□ -0.32
CIITA-202ENST00000381835 ZMYND8Q9ULU4 1186 aaPredicted RBP13.04□□□□□ -0.32
CIITA-202ENST00000381835 COL4A6Q14031 1691 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 DAPK3O43293 454 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 RPL7AP62424 266 aaKnown RBP13.03□□□□□ -0.32
CIITA-202ENST00000381835 TSPY1Q01534 308 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 DCUN1D2Q6PH85 259 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 CCDC121Q6ZUS5 278 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 XYLT1Q86Y38 959 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 C3orf20Q8ND61 904 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 CCDC26Q8TAB7 109 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 BCL7CQ8WUZ0 217 aaPredicted RBP13.03□□□□□ -0.32
CIITA-202ENST00000381835 MCEEQ96PE7 176 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 YME1L1Q96TA2 773 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 MYCBPQ99417 103 aaPredicted RBP13.03□□□□□ -0.32
CIITA-202ENST00000381835 B3GNT5Q9BYG0 378 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 KRT82Q9NSB4 513 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 ALG6Q9Y672 507 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 CEP290O15078 2479 aa13.03□□□□□ -0.32
CIITA-202ENST00000381835 SF3B1O75533 1304 aaKnown RBP eCLIP13.03□□□□□ -0.32
CIITA-202ENST00000381835 SYN3O14994 580 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 BEST1O76090 585 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 SETSIPP0DME0 302 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 FLT3P36888 993 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 SLC8A3P57103 927 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 PPP2R2AP63151 447 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 VARS2Q5ST30 1063 aaKnown RBP13.02□□□□□ -0.32
CIITA-202ENST00000381835 C6orf89Q6UWU4 347 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 NT5DC3Q86UY8 548 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 LRRTM3Q86VH5 581 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 CCDC13Q8IYE1 715 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 FEZF2Q8TBJ5 459 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 MYLPFQ96A32 169 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 DUSP16Q9BY84 665 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 SLITRK6Q9H5Y7 841 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 TMLHEQ9NVH6 421 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 SLC12A6Q9UHW9 1150 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 AMFRQ9UKV5 643 aa13.02□□□□□ -0.32
CIITA-202ENST00000381835 NOVA2Q9UNW9 492 aaKnown RBP13.02□□□□□ -0.32
CIITA-202ENST00000381835 TCRBV5S1A1TA0A578 114 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 OR4Q2P0C623 313 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 FAM200BP0CF97 657 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 NPR3P17342 541 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 GABRB2P47870 512 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 MAP3K7CLP57077 242 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 PLCB3Q01970 1234 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 KCTD19Q17RG1 926 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms