RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PRMT8Q9NR22 394 aaPredicted RBP17.8■□□□□ 0.44
HMGN4-201ENST00000377575 IL37Q9NZH6 218 aa17.8■□□□□ 0.44
HMGN4-201ENST00000377575 KIAA1468Q9P260 1216 aa17.8■□□□□ 0.44
HMGN4-201ENST00000377575 FAM92AA1XBS5 289 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 LEFTY2O00292 366 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 BEST1O76090 585 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 FGFR1OPO95684 399 aaKnown RBP17.79■□□□□ 0.44
HMGN4-201ENST00000377575 MBL2P11226 248 aaPredicted RBP17.79■□□□□ 0.44
HMGN4-201ENST00000377575 ARSAP15289 507 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 TBXAS1P24557 533 aaPredicted RBP17.79■□□□□ 0.44
HMGN4-201ENST00000377575 FMO5P49326 533 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 CUL2Q13617 745 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 CAMK4Q16566 473 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 ZNF394Q53GI3 561 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 HECTD3Q5T447 861 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 SNX30Q5VWJ9 437 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 MAML2Q8IZL2 1156 aaPredicted RBP17.79■□□□□ 0.44
HMGN4-201ENST00000377575 HEXIM2Q96MH2 286 aaKnown RBP17.79■□□□□ 0.44
HMGN4-201ENST00000377575 ARID3AQ99856 593 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 SEMA4AQ9H3S1 761 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 GMIPQ9P107 970 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 CPQQ9Y646 472 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 WNT6Q9Y6F9 365 aa17.79■□□□□ 0.44
HMGN4-201ENST00000377575 PMM2O15305 246 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 NFATC1O95644 943 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 CCR3P51677 355 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 STX17P56962 302 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 CSTF1Q05048 431 aaKnown RBP17.78■□□□□ 0.44
HMGN4-201ENST00000377575 NR1H3Q13133 447 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 EML3Q32P44 896 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 MAMSTRQ6ZN01 415 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 SYNPOQ8N3V7 929 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 TATDN2Q93075 761 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 TMEM176AQ96HP8 235 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 RNF38Q9H0F5 515 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 ECT2Q9H8V3 914 aa17.78■□□□□ 0.44
HMGN4-201ENST00000377575 TLR8Q9NR97 1041 aaKnown RBP17.78■□□□□ 0.44
HMGN4-201ENST00000377575 KIAA1549LQ6ZVL6 1849 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 PRR23AA6NEV1 266 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 OTOL1A6NHN0 477 aaPredicted RBP17.77■□□□□ 0.44
HMGN4-201ENST00000377575 SLC9A3R1O14745 358 aaPredicted RBP17.77■□□□□ 0.44
HMGN4-201ENST00000377575 P4HA2O15460 535 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 ZDHHC11BP0C7U3 371 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 RAD23BP54727 409 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 SLC8A3P57103 927 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 GRSF1Q12849 480 aaKnown RBP eCLIP17.77■□□□□ 0.44
HMGN4-201ENST00000377575 CCINQ13939 588 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 PPP1R26Q5T8A7 1209 aaPredicted RBP17.77■□□□□ 0.44
HMGN4-201ENST00000377575 SLC4A11Q8NBS3 891 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 JAKMIP2Q96AA8 810 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 DUSP16Q9BY84 665 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 NACA2Q9H009 215 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 SMPD4Q9NXE4 827 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 SCML2Q9UQR0 700 aa17.77■□□□□ 0.44
HMGN4-201ENST00000377575 ZFHX2Q9C0A1 2572 aaPredicted RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 TRDMT1O14717 391 aaKnown RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 COCHO43405 550 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 CCDC192P0DO97 292 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 GJA4P35212 333 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 MARSP56192 900 aaKnown RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 ZXDBP98169 803 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 TMEM196Q5HYL7 178 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 ARHGAP17Q68EM7 881 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 GPRIN1Q7Z2K8 1008 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 SPEM1Q8N4L4 309 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 NT5C1BQ96P26 610 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 FAM126AQ9BYI3 521 aaPredicted RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 CLSTN2Q9H4D0 955 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 RBM12Q9NTZ6 932 aaKnown RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 CFAP97Q9P2B7 532 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 CHORDC1Q9UHD1 332 aaPredicted RBP17.76■□□□□ 0.43
HMGN4-201ENST00000377575 RWDD2AQ9UIY3 292 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 PCDHGA2Q9Y5H1 932 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 R4GN57 208 aa17.76■□□□□ 0.43
HMGN4-201ENST00000377575 HHLA1C9JL84 531 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 CYP26A1O43174 497 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 ACO1P21399 889 aaKnown RBP17.75■□□□□ 0.43
HMGN4-201ENST00000377575 NRLP54845 237 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 LRMPQ12912 555 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 TRIM59Q8IWR1 403 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 P2RY13Q9BPV8 354 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 SRRTQ9BXP5 876 aaKnown RBP17.75■□□□□ 0.43
HMGN4-201ENST00000377575 CCSER2Q9H7U1 834 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 ZSCAN32Q9NX65 697 aa17.75■□□□□ 0.43
HMGN4-201ENST00000377575 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.75■□□□□ 0.43
HMGN4-201ENST00000377575 TLR5O60602 858 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 AFPP02771 609 aaKnown RBP17.74■□□□□ 0.43
HMGN4-201ENST00000377575 DRD1P21728 446 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 CXCL12P48061 93 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 KIF11P52732 1056 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 GOLGA8FQ08AF8 430 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 GOLGA8DPQ0D2H9 430 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 SGO2Q562F6 1265 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 FSTL4Q6MZW2 842 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 CLEC17AQ6ZS10 378 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 Q6ZS52 159 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 ASCL5Q7RTU5 278 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 TADA2BQ86TJ2 420 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 PPM1KQ8N3J5 372 aa17.74■□□□□ 0.43
HMGN4-201ENST00000377575 MLKLQ8NB16 471 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms