RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 USP17L7P0C7H9 530 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 ZDHHC11BP0C7U3 371 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 GNA15P30679 374 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 PPP3CCP48454 512 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 RGS7P49802 495 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 SLC8A3P57103 927 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 DRAP1Q14919 205 aaPredicted RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 RAB41Q5JT25 222 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 TMEM31Q5JXX7 168 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 DENND1BQ6P3S1 775 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 HFE2Q6ZVN8 426 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 SIX5Q8N196 739 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 CELF5Q8N6W0 485 aaKnown RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 PDZD8Q8NEN9 1154 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 DEPDC1BQ8WUY9 529 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 OVCA2Q8WZ82 227 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 NDRG1Q92597 394 aaKnown RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 E2F7Q96AV8 911 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 ZFYVE19Q96K21 471 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 C1QTNF1Q9BXJ1 281 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 NAA15Q9BXJ9 866 aaKnown RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 UBXN6Q9BZV1 441 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 RNF38Q9H0F5 515 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 CCSER2Q9H7U1 834 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 BRD9Q9H8M2 597 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 NMUR1Q9HB89 426 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 SLC2A4RGQ9NR83 387 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 FAM207AQ9NSI2 230 aaPredicted RBP14.09□□□□□ -0.15
VPS28-202ENST00000377348 TDP1Q9NUW8 608 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 OSER1Q9NX31 292 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 ZMYM5Q9UJ78 669 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 SCML2Q9UQR0 700 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 SIK3Q9Y2K2 1263 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 USP3Q9Y6I4 520 aa14.09□□□□□ -0.15
VPS28-202ENST00000377348 NUP210Q8TEM1 1887 aaPredicted RBP14.08□□□□□ -0.16
VPS28-202ENST00000377348 COL4A3Q01955 1670 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 A0A1W2PQH9 124 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 SOBPA7XYQ1 873 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 TEX33O43247 280 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 COCHO43405 550 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 OAS1P00973 400 aaKnown RBP14.08□□□□□ -0.16
VPS28-202ENST00000377348 SETSIPP0DME0 302 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 CLCN1P35523 988 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 PLA2G4AP47712 749 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 TKTL1P51854 596 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 ZXDBP98169 803 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 FCHO2Q0JRZ9 810 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 SNX30Q5VWJ9 437 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 PMF1Q6P1K2 205 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 SCD5Q86SK9 330 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 YAF2Q8IY57 180 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 BPIFB1Q8TDL5 484 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 SLC35F5Q8WV83 523 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 ZNF606Q8WXB4 792 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 PCMTD1Q96MG8 357 aaPredicted RBP14.08□□□□□ -0.16
VPS28-202ENST00000377348 PLCB1Q9NQ66 1216 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 SMPD4Q9NXE4 827 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 OBP2AQ9NY56 170 aa14.08□□□□□ -0.16
VPS28-202ENST00000377348 ZNF263O14978 683 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 GABBR2O75899 941 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 OLFM2O95897 454 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 TBX18O95935 607 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 LCP1P13796 627 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 POLR2FP61218 127 aaKnown RBP14.07□□□□□ -0.16
VPS28-202ENST00000377348 ADIGQ0VDE8 80 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 ZNF268Q14587 947 aaPredicted RBP14.07□□□□□ -0.16
VPS28-202ENST00000377348 STILQ15468 1287 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 ZNF77Q15935 545 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 HECTD3Q5T447 861 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 CCDC186Q7Z3E2 898 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 SLC47A2Q86VL8 602 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 FAM71AQ8IYT1 594 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 TTC8Q8TAM2 541 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 SH3RF2Q8TEC5 729 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 PBXIP1Q96AQ6 731 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 NAP1L5Q96NT1 182 aaPredicted RBP14.07□□□□□ -0.16
VPS28-202ENST00000377348 ERGIC2Q96RQ1 377 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 LRFN3Q9BTN0 628 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 ULBP1Q9BZM6 244 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 KIF9Q9HAQ2 790 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 LRRC4Q9HBW1 653 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 NLRC4Q9NPP4 1024 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 RTN4Q9NQC3 1192 aaKnown RBP14.07□□□□□ -0.16
VPS28-202ENST00000377348 TLR8Q9NR97 1041 aaKnown RBP14.07□□□□□ -0.16
VPS28-202ENST00000377348 HEBP1Q9NRV9 189 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 WNT16Q9UBV4 365 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 NAGPAQ9UK23 515 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 NUDT5Q9UKK9 219 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 ARHGAP26Q9UNA1 814 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 CPQQ9Y646 472 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 MYO16Q9Y6X6 1858 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 ZDBF2Q9HCK1 2354 aa14.07□□□□□ -0.16
VPS28-202ENST00000377348 PRR33A8MZF0 331 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 F8VZ95 297 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 ARNTLO00327 626 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 SCAMP3O14828 347 aaKnown RBP14.06□□□□□ -0.16
VPS28-202ENST00000377348 MDM4O15151 490 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 MED7O43513 233 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 TLR5O60602 858 aa14.06□□□□□ -0.16
VPS28-202ENST00000377348 ZBED1O96006 694 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms