RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 USP33Q8TEY7 942 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 SLC38A7Q9NVC3 462 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 SYBUQ9NX95 663 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 CD274Q9NZQ7 290 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 APPL1Q9UKG1 709 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 SNX9Q9Y5X1 595 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 TRAPPC3O43617 180 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 PRLRP16471 622 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 PSMC3P17980 439 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 NPTX2P47972 431 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 TMEM119Q4V9L6 283 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 NOTUMQ6P988 496 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 EPS8L3Q8TE67 593 aaKnown RBP12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 ZSWIM1Q9BR11 485 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 H2AFY2Q9P0M6 372 aaPredicted RBP12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 PLAGL2Q9UPG8 496 aa12.72□□□□□ -0.37
NPLOC4-202ENST00000374747 MAPTP10636 758 aaKnown RBP12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 KRR1Q13601 381 aaKnown RBP12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 NT5DC1Q5TFE4 455 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 ZNF720Q7Z2F6 126 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 APPL2Q8NEU8 664 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 ILKAPQ9H0C8 392 aaPredicted RBP12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 BRD8Q9H0E9 1235 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 LATS2Q9NRM7 1088 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 PKP3Q9Y446 797 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 KCPQ6ZWJ8 1503 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 ZBTB39O15060 712 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 ADAMTS3O15072 1205 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 NKRFO15226 690 aaKnown RBP eCLIP12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 SLIT2O94813 1529 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 MTFR1Q15390 333 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 MEI1Q5TIA1 1274 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 SCUBE1Q8IWY4 988 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 FBXO16Q8IX29 292 aaPredicted RBP12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 FEZF2Q8TBJ5 459 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 DNAJC7Q99615 494 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 NIF3L1Q9GZT8 377 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 GPRC5CQ9NQ84 441 aa12.71□□□□□ -0.37
NPLOC4-202ENST00000374747 EVPLLA8MZ36 301 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 ZCCHC18P0CG32 403 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 THRAP10827 490 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 IMPDH2P12268 514 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 CSTF3Q12996 717 aaKnown RBP12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 FIGNQ5HY92 759 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 GJC2Q5T442 439 aaPredicted RBP12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 SLC30A10Q6XR72 485 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 OTOP1Q7RTM1 612 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 TERB1Q8NA31 727 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 CDCA5Q96FF9 252 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 DDX50Q9BQ39 737 aaKnown RBP12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 FHDC1Q9C0D6 1143 aaPredicted RBP12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 SEMA6BQ9H3T3 888 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 SELENONQ9NZV5 590 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 GTF3C4Q9UKN8 822 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 TFR2Q9UP52 801 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 SLC30A1Q9Y6M5 507 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 KRT87PA6NCN2 255 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 ZNF263O14978 683 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 CTSHP09668 335 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 PTK6Q13882 451 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 FAM71DQ8N9W8 422 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 PNMA5Q96PV4 448 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 GLIS2Q9BZE0 524 aaPredicted RBP12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 V9GYQ6 96 aa12.71□□□□□ -0.38
NPLOC4-202ENST00000374747 PCNTO95613 3336 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 OGTO15294 1046 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 GLRA3O75311 464 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 RALBP11234 206 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 CALB2P22676 271 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 GTF2H1P32780 548 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 SARSP49591 514 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 ERVK-24P63145 666 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 TATDN1Q6P1N9 297 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 ZNF669Q96BR6 464 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 P2RX7Q99572 595 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 GEMIN8Q9NWZ8 242 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 SLC39A10Q9ULF5 831 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 ADGRA2Q96PE1 1338 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 PDHXO00330 501 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 TOMM70O94826 608 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 CPB1P15086 417 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 GPD1P21695 349 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 MLH1P40692 756 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 MTM1Q13496 603 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 SYTL3Q4VX76 610 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 CDKAL1Q5VV42 579 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 MAP1SQ66K74 1059 aaPredicted RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 IYDQ6PHW0 289 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 C17orf102A2RUQ5 167 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 MTSS1O43312 755 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 ITGA4P13612 1032 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 RAB14P61106 215 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 TMEM62Q0P6H9 643 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 TBC1D19Q8N5T2 526 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 CYP2W1Q8TAV3 490 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 WDR18Q9BV38 432 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 SHCBP1LQ9BZQ2 653 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 ALS2Q96Q42 1657 aa12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 H2AFYO75367 372 aaKnown RBP12.7□□□□□ -0.38
NPLOC4-202ENST00000374747 RARGP13631 454 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms