RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NT5C1AQ9BXI3 368 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 SMPD4Q9NXE4 827 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 HOOK1Q9UJC3 728 aaKnown RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 CHURC1-FNTBB4DL54 471 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 STX10O60499 249 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 CILPO75339 1184 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 MBL2P11226 248 aaPredicted RBP22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 HOXA6P31267 233 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 FNTBP49356 437 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 MXI1P50539 228 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 MAP3K7CLP57077 242 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 DMWDQ09019 674 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 HECTD3Q5T447 861 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 LONP2Q86WA8 852 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 FBXL13Q8NEE6 735 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 SEMA4DQ92854 862 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 FAXDC2Q96IV6 333 aa22.98■■□□□ 1.27
CCDC28B-201ENST00000373602 SLC16A3O15427 465 aaKnown RBP22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 COCHO43405 550 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 ATG13O75143 517 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 FAM200BP0CF97 657 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 ADORA2BP29275 332 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 TUBP50607 506 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 PMS1P54277 932 aaKnown RBP22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 FKBP3Q00688 224 aaKnown RBP22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 FBXO43Q4G163 708 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 ANKRD40Q6AI12 368 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 FILIP1Q7Z7B0 1213 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 DDX42Q86XP3 938 aaKnown RBP eCLIP22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 CYFIP2Q96F07 1278 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 FBXO44Q9H4M3 255 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 RAB20Q9NX57 234 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 GMIPQ9P107 970 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 CFAP97Q9P2B7 532 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 NCDNQ9UBB6 729 aa22.97■■□□□ 1.27
CCDC28B-201ENST00000373602 SLC9A3R1O14745 358 aaPredicted RBP22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 RNF40O75150 1001 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 CD58P19256 250 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 LRRC63Q05C16 580 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 CLEC20AQ6ZU45 233 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 KIAA2013Q8IYS2 634 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 ADGRG2Q8IZP9 1017 aa22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 EZH1Q92800 747 aaPredicted RBP22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 ZFRQ96KR1 1074 aaKnown RBP22.96■■□□□ 1.27
CCDC28B-201ENST00000373602 CFAP54Q96N23 3096 aa22.95■■□□□ 1.27
CCDC28B-201ENST00000373602 HHLA1C9JL84 531 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 HOXC13P31276 330 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 CNR2P34972 360 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 GAB4Q2WGN9 574 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 HEATR6Q6AI08 1181 aaKnown RBP22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 DNAI2Q9GZS0 605 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 CCSER2Q9H7U1 834 aa22.95■■□□□ 1.26
CCDC28B-201ENST00000373602 E2F8A0AVK6 867 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 TRIM49BA6NDI0 452 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 HRO43593 1189 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 CYP17A1P05093 508 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 OPRD1P41143 372 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 PGFP49763 221 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 TCERG1LQ5VWI1 586 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 GPRIN1Q7Z2K8 1008 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 WDR5BQ86VZ2 330 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 TTC39CQ8N584 583 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 SECISBP2LQ93073 1101 aaKnown RBP22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 PNPLA8Q9NP80 782 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 TBC1D14Q9P2M4 693 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 MAN1B1Q9UKM7 699 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 COQ4Q9Y3A0 265 aa22.94■■□□□ 1.26
CCDC28B-201ENST00000373602 MYH10P35580 1976 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 SCAMP3O14828 347 aaKnown RBP22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 DHCR24Q15392 516 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 CBWD6Q4V339 395 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 DCAF17Q5H9S7 520 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 CBWD3Q5JTY5 395 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 CBWD5Q5RIA9 395 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 TATDN2Q93075 761 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 DHTKD1Q96HY7 919 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 FAM124BQ9H5Z6 455 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 TLR8Q9NR97 1041 aaKnown RBP22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 RAB23Q9ULC3 237 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 SLC8A2Q9UPR5 921 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 SCML2Q9UQR0 700 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 ATG2BQ96BY7 2078 aa22.93■■□□□ 1.26
CCDC28B-201ENST00000373602 CCDC163A0A0D9SF12 145 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 PSMA7O14818 248 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 ID4P47928 161 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 STIM1Q13586 685 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 SIM2Q14190 667 aaPredicted RBP22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 ZNF394Q53GI3 561 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 PPP1R26Q5T8A7 1209 aaPredicted RBP22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 LAIR1Q6GTX8 287 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 RHBDF2Q6PJF5 856 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 PRR23BQ6ZRT6 265 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 GPR161Q8N6U8 529 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 OTUB2Q96DC9 234 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 DUSP9Q99956 384 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 DUSP16Q9BY84 665 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 CISHQ9NSE2 258 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 ARMCX3Q9UH62 379 aaPredicted RBP22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 GMEB2Q9UKD1 530 aa22.92■■□□□ 1.26
CCDC28B-201ENST00000373602 ZNF292O60281 2723 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms