RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 DDX43Q9NXZ2 648 aaKnown RBP14.27□□□□□ -0.13
USP49-201ENST00000373006 DDX56Q9NY93 547 aaKnown RBP14.27□□□□□ -0.13
USP49-201ENST00000373006 FEM1BQ9UK73 627 aa14.27□□□□□ -0.13
USP49-201ENST00000373006 PLA2G4CQ9UP65 541 aa14.27□□□□□ -0.13
USP49-201ENST00000373006 F8W8V4 182 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 OPHN1O60890 802 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 ITGBL1O95965 494 aaPredicted RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 RBP3P10745 1247 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 JAK3P52333 1124 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 GSTA3Q16772 222 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 E2F7Q96AV8 911 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 TRIM56Q9BRZ2 755 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 TAGLN3Q9UI15 199 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 HERC5Q9UII4 1024 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 PCDHA10Q9Y5I2 948 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 TCRBV5S1A1TA0A578 114 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 LRCH4O75427 683 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 CLDN10P78369 228 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 MTERF2Q49AM1 385 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 FAXCQ5TGI0 409 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 LPCAT4Q643R3 524 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 SCARA5Q6ZMJ2 495 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 NIPA1Q7RTP0 329 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 POU5F2Q8N7G0 328 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 KCTD6Q8NC69 237 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 SPATA18Q8TC71 538 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 DNAJC1Q96KC8 554 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 TARS2Q9BW92 718 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 FAM192AQ9GZU8 254 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 KCNK4Q9NYG8 393 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 NPM3O75607 178 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 MAP3K6O95382 1288 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 KDELR1P24390 212 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 HIRAP54198 1017 aaPredicted RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 TMED1Q13445 227 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 TRMT5Q32P41 509 aaKnown RBP14.26□□□□□ -0.13
USP49-201ENST00000373006 RASSF3Q86WH2 238 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 NUDCD3Q8IVD9 361 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 TFAP2BQ92481 460 aa14.26□□□□□ -0.13
USP49-201ENST00000373006 STAM2O75886 525 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 MRPS5P82675 430 aaKnown RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 LIN52Q52LA3 116 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 NLGN1Q8N2Q7 840 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 EFCAB3Q8N7B9 438 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 TMEM35BQ8NCS4 154 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 NMD3Q96D46 503 aaKnown RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 MMP19Q99542 508 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 MSTO1Q9BUK6 570 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 DNAAF2Q9NVR5 837 aaKnown RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 C6orf222P0C671 652 aaPredicted RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 PTGER2P43116 358 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 EPHB1P54762 984 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 PDE1BQ01064 536 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 KRT76Q01546 638 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 MMRN1Q13201 1228 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 RALGPS1Q5JS13 557 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 DARS2Q6PI48 645 aaKnown RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 CCDC124Q96CT7 223 aaKnown RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 DMAP1Q9NPF5 467 aaPredicted RBP14.25□□□□□ -0.13
USP49-201ENST00000373006 ARHGAP28Q9P2N2 729 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 FBXO40Q9UH90 709 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 PLLPQ9Y342 182 aa14.25□□□□□ -0.13
USP49-201ENST00000373006 A0A0B4J269 797 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SPDYE2BA6NHP3 402 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 LRRIQ4A6NIV6 560 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 STK10O94804 968 aaKnown RBP14.24□□□□□ -0.13
USP49-201ENST00000373006 SPATA31D3P0C874 917 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SPDYE6P0CI01 402 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 KRT3P12035 628 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 TBXAS1P24557 533 aaPredicted RBP14.24□□□□□ -0.13
USP49-201ENST00000373006 CRABP2P29373 138 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SFNP31947 248 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SLC25A11Q02978 314 aaKnown RBP14.24□□□□□ -0.13
USP49-201ENST00000373006 SPDYE2Q495Y8 402 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 ARHGEF16Q5VV41 709 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SPATA31D4Q6ZUB0 917 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 BBS12Q6ZW61 710 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SLC26A7Q8TE54 656 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 APOL6Q9BWW8 343 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 WWP1Q9H0M0 922 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 PPP1R1BQ9UD71 204 aaPredicted RBP14.24□□□□□ -0.13
USP49-201ENST00000373006 TEX264Q9Y6I9 313 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SLC4A7Q9Y6M7 1214 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 A6NJR5 290 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 NDC80O14777 642 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 PTPN7P35236 360 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 USP46P62068 366 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 ORC1Q13415 861 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 SLC26A11Q86WA9 606 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 MCF2L2Q86YR7 1114 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 FAF2Q96CS3 445 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 PDCD2LQ9BRP1 358 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 CCDC106Q9BWC9 280 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 POLIQ9UNA4 740 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 PDE5AO76074 875 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 CDK7P50613 346 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 MYL6P60660 151 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 ASPHQ12797 758 aa14.24□□□□□ -0.13
USP49-201ENST00000373006 DYNC1I2Q13409 638 aaKnown RBP14.24□□□□□ -0.13
USP49-201ENST00000373006 SFT2D3Q587I9 215 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms