RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PACSIN2Q9UNF0 486 aaPredicted RBP20.89■□□□□ 0.93
CLN3-205ENST00000359984 UQCRHLA0A096LP55 91 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 UQCRHP07919 91 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 CNPP09543 421 aaKnown RBP20.88■□□□□ 0.93
CLN3-205ENST00000359984 USP17L7P0C7H9 530 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 SLC5A3P53794 718 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 DAOAP59103 153 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 CREMQ03060 361 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 TCF25Q9BQ70 676 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 C11orf84Q9BUA3 381 aaPredicted RBP20.88■□□□□ 0.93
CLN3-205ENST00000359984 PBX4Q9BYU1 374 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 AMFRQ9UKV5 643 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 USP3Q9Y6I4 520 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 RANBP2P49792 3224 aaKnown RBP20.88■□□□□ 0.93
CLN3-205ENST00000359984 SEC24AO95486 1093 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 ZBED1O96006 694 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 CA8P35219 290 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 FLT3P36888 993 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 ERVK-21P61565 698 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 UBE3AQ05086 875 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 EFHC1Q5JVL4 640 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 FNIP1Q8TF40 1166 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 RXFP2Q8WXD0 754 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 SAMD11Q96NU1 681 aa20.88■□□□□ 0.93
CLN3-205ENST00000359984 GBF1Q92538 1859 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.87■□□□□ 0.93
CLN3-205ENST00000359984 C2CD4BA6NLJ0 364 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 GRM6O15303 877 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 ATF2P15336 505 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 BMP8BP34820 402 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 GTF2F1P35269 517 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLN3-205ENST00000359984 PAPD7Q5XG87 772 aaKnown RBP20.87■□□□□ 0.93
CLN3-205ENST00000359984 PM20D1Q6GTS8 502 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 BHLHA9Q7RTU4 235 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 STKLD1Q8NE28 680 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 GPR152Q8TDT2 470 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 ENTPD7Q9NQZ7 604 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 LCMT1Q9UIC8 334 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 CHD9Q3L8U1 2897 aa20.87■□□□□ 0.93
CLN3-205ENST00000359984 YJEFN3A6XGL0 299 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 E7ENQ6 273 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 PDGFRAP16234 1089 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 PSMA2P25787 234 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 PIGHQ14442 188 aaPredicted RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 HFE2Q6ZVN8 426 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 ARCQ7LC44 396 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 NUP93Q8N1F7 819 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 SCML4Q8N228 414 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 TLR9Q9NR96 1032 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 IRAK3Q9Y616 596 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 SPOPO43791 374 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 HSF2BPO75031 334 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 URI1O94763 535 aaPredicted RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 CSPG5O95196 566 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 GPD1P21695 349 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 MAN1A1P33908 653 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 TUFMP49411 452 aaKnown RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 ZNF143P52747 638 aaPredicted RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 RPL10AP62906 217 aaKnown RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 AMPD2Q01433 879 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 CAMK1Q14012 370 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 RPS6KA1Q15418 735 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 DAB2IPQ5VWQ8 1189 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 PLPP4Q5VZY2 271 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 NIPA2Q8N8Q9 360 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 MRPL43Q8N983 215 aaKnown RBP20.86■□□□□ 0.93
CLN3-205ENST00000359984 CD101Q93033 1021 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 FAM149B1Q96BN6 582 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 HES6Q96HZ4 224 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 SPATA17Q96L03 361 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 KLHL5Q96PQ7 755 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 NKX2-4Q9H2Z4 354 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 ASNSD1Q9NWL6 643 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 HSFX1Q9UBD0 423 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 MSRAQ9UJ68 235 aa20.86■□□□□ 0.93
CLN3-205ENST00000359984 PATJQ8NI35 1801 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 HIDE1A8MVS5 230 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 SART1O43290 800 aaKnown RBP20.85■□□□□ 0.93
CLN3-205ENST00000359984 GLI1P08151 1106 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 SLC1A1P43005 524 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 YWHAZP63104 245 aaKnown RBP20.85■□□□□ 0.93
CLN3-205ENST00000359984 IFRD2Q12894 506 aaPredicted RBP20.85■□□□□ 0.93
CLN3-205ENST00000359984 SMC1AQ14683 1233 aaKnown RBP20.85■□□□□ 0.93
CLN3-205ENST00000359984 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.85■□□□□ 0.93
CLN3-205ENST00000359984 IRGQQ8WZA9 623 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 CYP4F11Q9HBI6 524 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 SNX12Q9UMY4 172 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 USTQ9Y2C2 406 aa20.85■□□□□ 0.93
CLN3-205ENST00000359984 C2orf71A6NGG8 1288 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 FSCN2O14926 492 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 ATF6P18850 670 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 DNA2P51530 1060 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 RAB30Q15771 203 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 CCDC14Q49A88 953 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 CNPY3Q9BT09 278 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 IL37Q9NZH6 218 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 TNRC18O15417 2968 aaPredicted RBP20.84■□□□□ 0.93
CLN3-205ENST00000359984 DPYSL4O14531 572 aa20.84■□□□□ 0.93
CLN3-205ENST00000359984 DDX3YO15523 660 aaKnown RBP20.84■□□□□ 0.93
CLN3-205ENST00000359984 FYNP06241 537 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms