RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 KRT78Q8N1N4 520 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 ARMC2Q8NEN0 867 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PLEKP08567 350 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SLC39A12Q504Y0 691 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 GALNT4Q8N4A0 578 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 GNG14A0A1W2PPG7 69 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 RAD23BP54727 409 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 ADGRA1Q86SQ6 560 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 RBM23Q86U06 439 aaKnown RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SLC47A2Q86VL8 602 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SERAC1Q96JX3 654 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PCDHB5Q9Y5E4 795 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 IFRD1O00458 451 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 NKRFO15226 690 aaKnown RBP eCLIP16.11■□□□□ 0.172e-6■■□□□ 14.2
PTPRF-201ENST00000359947 ALDH9A1P49189 494 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 CD302Q8IX05 232 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PPIL6Q8IXY8 311 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 B3GALNT2Q8NCR0 500 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 TMEM176AQ96HP8 235 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PDGFCQ9NRA1 345 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 RIC8BQ9NVN3 520 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 NUDT5Q9UKK9 219 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 DYRK1BQ9Y463 629 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 RAD51CO43502 376 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PON1P27169 355 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PMS1P54277 932 aaKnown RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 ADIGQ0VDE8 80 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 CNGA3Q16281 694 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 JAMLQ86YT9 394 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PNMA5Q96PV4 448 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 CGRRF1Q99675 332 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SNCAIPQ9Y6H5 919 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 RASSF9O75901 435 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 JCHAINP01591 159 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CCDC159P0C7I6 412 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 TOMM20Q15388 145 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 BOLA3Q53S33 107 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 LPCAT1Q8NF37 534 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SOCS4Q8WXH5 440 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 ECSITQ9BQ95 431 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 AAR2Q9Y312 384 aaKnown RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 ZDHHC9Q9Y397 364 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 OR1E1P30953 314 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 NR1I3Q14994 352 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 TIGD7Q6NT04 549 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CXCL17Q6UXB2 119 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SPATA21Q7Z572 469 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CISHQ9NSE2 258 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PADI4Q9UM07 663 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CPSF4O95639 269 aaKnown RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PGK1P00558 417 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 TCF3P15923 654 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SREBF1P36956 1147 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CNTN1Q12860 1018 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 USP18Q9UMW8 372 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SNX8Q9Y5X2 465 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 GUCA1AP43080 201 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PSEN2P49810 448 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 IKBKEQ14164 716 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 MYO1HQ8N1T3 1032 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PCYOX1LQ8NBM8 494 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 THTPAQ9BU02 230 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 ADGRE3Q9BY15 652 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 UTP6Q9NYH9 597 aaKnown RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 LRRIQ3A6PVS8 624 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PSMD12O00232 456 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SLC26A4O43511 780 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 VGLL4Q14135 290 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 ANGPT1Q15389 498 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 C3orf67Q6ZVT6 689 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 RERGLQ9H628 205 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 STOML1Q9UBI4 398 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 TBC1D4O60343 1298 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 PLA2G6O60733 806 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 ALDH5A1P51649 535 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-201ENST00000359947 SKOR1P84550 965 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 GMCL1P1Q8NEA9 526 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CYP2W1Q8TAV3 490 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 VPS50Q96JG6 964 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 AP4E1Q9UPM8 1137 aa16.1■□□□□ 0.17
PTPRF-201ENST00000359947 CTDNEP1O95476 244 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 RFX5P48382 616 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 DNERQ8NFT8 737 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 ADAM2Q99965 735 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 SYT15Q9BQS2 421 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 OSBPL10Q9BXB5 764 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 MIR1-1HGQ9H1L0 117 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 MSH3P20585 1137 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 NOL9Q5SY16 702 aaKnown RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 BTNL9Q6UXG8 535 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 MOXD2PA6NHM9 499 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 XYLBO75191 536 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 GJC2Q5T442 439 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 FOXR1Q6PIV2 292 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 BAZ2BQ9UIF8 2168 aaKnown RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 FDPSP14324 419 aaKnown RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 VSNL1P62760 191 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 ACTN3Q08043 901 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-201ENST00000359947 DEFB115Q30KQ5 88 aa16.09■□□□□ 0.17
PTPRF-201ENST00000359947 TUBGCP3Q96CW5 907 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms