RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PSMA4P25789 261 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 HALP42357 657 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 EPHB3P54753 998 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CYP24A1Q07973 514 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TRIP10Q15642 601 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SLFNL1Q499Z3 407 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 OR8H2Q8N162 312 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 LEMD2Q8NC56 503 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 GPRC5AQ8NFJ5 357 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF669Q96BR6 464 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ANO9A1A5B4 782 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SAC3D1A6NKF1 404 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CCR4P51679 360 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 BAATQ14032 418 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 LONRF1Q17RB8 773 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 PRR5LQ6MZQ0 368 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 R3HCC1LQ7Z5L2 792 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 PRPF39Q86UA1 669 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 RGL4Q8IZJ4 473 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CSGALNACT1Q8TDX6 532 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 MED8Q96G25 268 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TIPINQ9BVW5 301 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 IGFLR1Q9H665 355 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 INTS13Q9NVM9 706 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 NEU2Q9Y3R4 380 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 DGAT1O75907 488 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 HLA-DQA2P01906 255 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 FGRP09769 529 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 YY1P25490 414 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 MAPKAPK2P49137 400 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 GEMP55040 296 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 AKIRIN2Q53H80 203 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 PRAMEF18Q5VWM3 479 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 MRNIPQ6NTE8 343 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 HEATR4Q86WZ0 1026 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 HERC6Q8IVU3 1022 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 ENGASEQ8NFI3 743 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 KAT2BQ92831 832 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF512BQ96KM6 892 aaPredicted RBP10.52□□□□□ -0.72
CLIP1-202ENST00000358808 WDCPQ9H6R7 721 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 MYOZ2Q9NPC6 264 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 VPS28Q9UK41 221 aa10.52□□□□□ -0.72
CLIP1-202ENST00000358808 ACSL4O60488 711 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 EYA4O95677 639 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 HSMCR30P0CW71 290 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 IGFBP4P22692 258 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 MAGEA10P43363 369 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ATN1P54259 1190 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 NME5P56597 212 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 NECTIN1Q15223 517 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SLC15A2Q16348 729 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 STYK1Q6J9G0 422 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ESRP1Q6NXG1 681 aaKnown RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 TRMT11Q7Z4G4 463 aaKnown RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 LINC00116Q8NCU8 138 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF333Q96JL9 665 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 RBM15Q96T37 977 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ISCA1Q9BUE6 129 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 CLEC4MQ9H2X3 399 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 GOLPH3Q9H4A6 298 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 VIPAS39Q9H9C1 493 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SMARCAL1Q9NZC9 954 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 NCKAP1Q9Y2A7 1128 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 PITPNM2Q9BZ72 1349 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ZC3H11AO75152 810 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ITGALP20701 1170 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 TAF6P49848 677 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 PKN2Q16513 984 aaKnown RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 FRMD5Q7Z6J6 570 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 MIB1Q86YT6 1006 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 IZUMO1Q8IYV9 350 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 LPAR1Q92633 364 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 TEX13BQ9BXU2 312 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 UBXN6Q9BZV1 441 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 CLPBQ9H078 707 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SLITRK2Q9H156 845 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 VTA1Q9NP79 307 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 KLK14Q9P0G3 267 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 TPST1O60507 370 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF23P17027 643 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 EPHB2P29323 1055 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 PPP2R1BP30154 601 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 RBBP4Q09028 425 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ARMC4Q5T2S8 1044 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SCARA3Q6AZY7 606 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SLC20A1Q8WUM9 679 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 TFB1MQ8WVM0 346 aaKnown RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SH2D3AQ9BRG2 576 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 OSBPL5Q9H0X9 879 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 BARHL2Q9NY43 387 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 SAE1Q9UBE0 346 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-202ENST00000358808 VTI1BQ9UEU0 232 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 ARL2BPQ9Y2Y0 163 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 CDY2AQ9Y6F7 541 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 CDY1Q9Y6F8 540 aa10.52□□□□□ -0.73
CLIP1-202ENST00000358808 DNAJB2P25686 324 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 RFC5P40937 340 aa10.51□□□□□ -0.73
CLIP1-202ENST00000358808 RHOAP61586 193 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms