RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 HID1Q8IV36 788 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 VPS52Q8N1B4 723 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 MFSD4AQ8N468 514 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CSGALNACT2Q8N6G5 542 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 MCPH1Q8NEM0 835 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 RSAD2Q8WXG1 361 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SECISBP2LQ93073 1101 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CCDC51Q96ER9 411 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 LIN37Q96GY3 246 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 TMEM169Q96HH4 297 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 FAM84AQ96KN4 292 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 FAM167AQ96KS9 214 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SLC38A3Q99624 504 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 REEP2Q9BRK0 252 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 MRPL9Q9BYD2 267 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 EPC1Q9H2F5 836 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 KCND1Q9NSA2 647 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 FAM53CQ9NYF3 392 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 IFNKQ9P0W0 207 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 LARSQ9P2J5 1176 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 EPS15L1Q9UBC2 864 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SLC9A2Q9UBY0 812 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 FBXO4Q9UKT5 387 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 USP18Q9UMW8 372 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 TRAF3IP3Q9Y228 551 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 GDAQ9Y2T3 454 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 DAAM1Q9Y4D1 1078 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 PCDHGA2Q9Y5H1 932 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CAPN6Q9Y6Q1 641 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CLUHO75153 1309 aa7.52□□□□□ -1.2
VPS13A-201ENST00000355766 COL1A2P08123 1366 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 A0A087WWV3 80 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KCNJ18B7U540 433 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 NT5C1B-RDH14C9J2C7 533 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 H3BS24 57 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CHMP2AO43633 222 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CCNE2O96020 404 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 SSBP05455 408 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 ATP1A3P13637 1013 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 IDEP14735 1019 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 TGM1P22735 817 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 RPL13P26373 211 aaKnown RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CASP1P29466 404 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 GBP2P32456 591 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 PBX1P40424 430 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 RARRES1P49788 294 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CLCN4P51793 760 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CRYBB1P53674 252 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 BCAR1P56945 870 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CYP4A11Q02928 519 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 DMWDQ09019 674 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KCNJ12Q14500 433 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 NR1I3Q14994 352 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 PTPN14Q15678 1187 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KNOP1Q1ED39 458 aaKnown RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KIZQ2M2Z5 673 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 XKR3Q5GH77 459 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 FIGNQ5HY92 759 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 LETMD1Q6P1Q0 360 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 PLPPR4Q7Z2D5 763 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 TMEM173Q86WV6 379 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 ECHDC2Q86YB7 292 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 TPH2Q8IWU9 490 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 DRC7Q8IY82 874 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KIAA0319LQ8IZA0 1049 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 SLC44A3Q8N4M1 653 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CMASQ8NFW8 434 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 STAMQ92783 540 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 KIFAP3Q92845 792 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 DYDC2Q96IM9 177 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 CCDC43Q96MW1 224 aaKnown RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 FRMD6Q96NE9 622 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 PPP1R16BQ96T49 567 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 PLIN2Q99541 437 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 NAA15Q9BXJ9 866 aaKnown RBP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 TMEM206Q9H813 350 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 C19orf73Q9NVV2 129 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 RGL1Q9NZL6 768 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13A-201ENST00000355766 ST14Q9Y5Y6 855 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 FANCMQ8IYD8 2048 aa7.52□□□□□ -1.21
VPS13A-201ENST00000355766 SPTBN2O15020 2390 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 MAPK13O15264 365 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 CCP110O43303 1012 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 LAMTOR5O43504 91 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 CALUO43852 315 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 ZC3H11AO75152 810 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 LRRN2O75325 713 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 CST3P01034 146 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 TUBB4AP04350 444 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 TPM1P09493 284 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 PLS3P13797 630 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 EIF4BP23588 611 aaKnown RBP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 KLRC1P26715 233 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 ALDH7A1P49419 539 aaKnown RBP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 DNM2P50570 870 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 STAT5BP51692 787 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 ACTR2P61160 394 aa7.51□□□□□ -1.21
VPS13A-201ENST00000355766 TBX2Q13207 712 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-201ENST00000355766 CTTNQ14247 550 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms