RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC12A9Q9BXP2 914 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NT5C3AQ9H0P0 336 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SDCBP2Q9H190 292 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RXFP1Q9HBX9 757 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PRDM7Q9NQW5 492 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.5□□□□□ -2.01
VPS54-202ENST00000354504 FAM153AQ9UHL3 310 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SIX4Q9UIU6 781 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CBLCQ9ULV8 474 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 V9GYY5 206 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 LAMA5O15230 3695 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PCM1Q15154 2024 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CELSR3Q9NYQ7 3312 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TARSL2A2RTX5 802 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 GPR32O75388 356 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RPS6KA5O75582 802 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 DDNO94850 711 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 ENDOD1O94919 500 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SOD2P04179 222 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CYP1A2P05177 515 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 HLA-DOAP06340 250 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CKMP06732 381 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CD3EP07766 207 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SRGAP2CP0DJJ0 459 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TCF4P15884 667 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 XBP1P17861 261 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FPR2P25090 351 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 KRT9P35527 623 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MRPL12P52815 198 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 NPEPPSP55786 919 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RNF4P78317 190 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TMPRSS15P98073 1019 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 OGDHQ02218 1023 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GUCY2DQ02846 1103 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 UBXN1Q04323 297 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CAPSQ13938 189 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GPNMBQ14956 572 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 DLGAP5Q15398 846 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TRIM61Q5EBN2 209 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 EFCAB13Q8IY85 973 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MYOCDQ8IZQ8 938 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ZSCAN18Q8TBC5 510 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 POMGNT1Q8WZA1 660 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RCC1LQ96I51 464 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 MS4A14Q96JA4 679 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SH2D3AQ9BRG2 576 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SYT17Q9BSW7 474 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 KIFC3Q9BVG8 833 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CARD6Q9BX69 1037 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MOV10L1Q9BXT6 1211 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 GLT8D2Q9H1C3 349 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PORCNQ9H237 461 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GOLPH3Q9H4A6 298 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 HAUS4Q9H6D7 363 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TOPORSQ9NS56 1045 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 GGA3Q9NZ52 723 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 WHRNQ9P202 907 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MORF4L1Q9UBU8 362 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SFMBT1Q9UHJ3 866 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FBXL21Q9UKT6 434 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SLC45A1Q9Y2W3 748 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 A0A0B4J269 797 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TRAV20A0A0B4J274 112 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C11orf97A0A1B0GVM6 126 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 I6L893 689 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 FOXN3O00409 490 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 MAFO75444 373 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 SLU7O95391 586 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 MED26O95402 600 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C22orf31O95567 290 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SNRPB2P08579 225 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 FGFR1P11362 822 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CNGA1P29973 690 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HOXA11P31270 313 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 YWHABP31946 246 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 CYP4A11Q02928 519 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 MBTD1Q05BQ5 628 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 DMTNQ08495 405 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 BFSP1Q12934 665 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 BAATQ14032 418 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 PTPN14Q15678 1187 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 FAM187BQ17R55 369 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HSDL1Q3SXM5 330 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RAB6CQ53S08 254 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RNF187Q5TA31 235 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 PIK3R6Q5UE93 754 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 KLHL10Q6JEL2 608 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 XRRA1Q6P2D8 792 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NFRKBQ6P4R8 1299 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CCDC174Q6PII3 467 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SH2D5Q6ZV89 423 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 AGBL5Q8NDL9 886 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TRPV1Q8NER1 839 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 DNERQ8NFT8 737 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RDM1Q8NG50 284 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ACTRT1Q8TDG2 376 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 MZB1Q8WU39 189 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RABGGTAQ92696 567 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SLCO2A1Q92959 643 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CAVIN3Q969G5 261 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms