RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 DLC1Q96QB1 1528 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 OVOS2A0A0G2JMS6 1433 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 RECQL5O94762 991 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 ALDH1A1P00352 501 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 CDC25AP30304 524 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 ETFBP38117 255 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 KCNMA1Q12791 1236 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 STX4Q12846 297 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 OR7A2PQ8NGA2 310 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 MDM1Q8TC05 714 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 AFG1LQ8WV93 481 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 METTL5Q9NRN9 209 aaKnown RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 HAO1Q9UJM8 370 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 E9PCH4 1651 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 PTENP60484 403 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 FOXD4Q12950 439 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 NCOA4Q13772 614 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 EPHA7Q15375 998 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 LIN54Q6MZP7 749 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 OR6Y1Q8NGX8 325 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 LENG1Q96BZ8 264 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 VCPIP1Q96JH7 1222 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 MCEEQ96PE7 176 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 RRN3Q9NYV6 651 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 C1orf232A0A0U1RR37 186 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 WFS1O76024 890 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 CYBBP04839 570 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 CCT3P49368 545 aaKnown RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 ACLYP53396 1101 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 GNA13Q14344 377 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 ZCCHC11Q5TAX3 1644 aaKnown RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 TMEM2Q9UHN6 1383 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 IRGMA1A4Y4 181 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 PIK3CDO00329 1044 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 CHN2P52757 468 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 FRG1Q14331 258 aaKnown RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 PHKG1Q16816 387 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 SHROOM1Q2M3G4 852 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 ANKMY2Q8IV38 441 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 DLG5Q8TDM6 1919 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 RAD51BO15315 384 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 PIK3CGP48736 1102 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 SESN2P58004 480 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 GTF3C2Q8WUA4 911 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 KCTD14Q9BQ13 255 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-202ENST00000347401 KIFC1Q9BW19 673 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 IPPQ9Y573 584 aa13.73□□□□□ -0.21
COL6A3-202ENST00000347401 LDLRP01130 860 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 RUNDC3AQ59EK9 446 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 NEK5Q6P3R8 708 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TRMT6Q9UJA5 497 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 HBS1LQ9Y450 684 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 F8W810 466 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TRDMT1O14717 391 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PDGFRBP09619 1106 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 ZCCHC18P0CG32 403 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TPBGLP0DKB5 382 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 VPS72Q15906 364 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 ATP6AP1LQ52LC2 224 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 HAVCR1Q96D42 359 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 SH3GLB1Q9Y371 365 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 NR3C2P08235 984 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 MAPKAPK2P49137 400 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 RFX4Q33E94 735 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PTRHD1Q6GMV3 140 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PGM2Q96G03 612 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 LRRC40Q9H9A6 602 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TRIM49D1C9J1S8 452 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 RBP3P10745 1247 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 RCVRNP35243 200 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 MCAMP43121 646 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 SPICE1Q8N0Z3 855 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PLEKHA8P1O95397 391 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CDH3P22223 829 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 SNX30Q5VWJ9 437 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TTC30AQ86WT1 665 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TTC30BQ8N4P2 665 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 LPAR1Q92633 364 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 DCLK3Q9C098 648 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 LSM7Q9UK45 103 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CCDC130P13994 396 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CRABP2P29373 138 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 NME3Q13232 169 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 MSLNQ13421 630 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 TMEM132DQ14C87 1099 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 RASSF5Q8WWW0 418 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CCNB1IP1Q9NPC3 277 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 DYRK3O43781 588 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 POLR2EP19388 210 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PLA2G4FQ68DD2 849 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 THOC7Q6I9Y2 204 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 PAIP1Q9H074 479 aaKnown RBP13.72□□□□□ -0.21
COL6A3-202ENST00000347401 NAGPAQ9UK23 515 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 INPP5FQ9Y2H2 1132 aa13.72□□□□□ -0.21
COL6A3-202ENST00000347401 CHD1O14646 1710 aa13.71□□□□□ -0.21
COL6A3-202ENST00000347401 VPS26AO75436 327 aa13.71□□□□□ -0.21
COL6A3-202ENST00000347401 RPL22P35268 128 aaKnown RBP13.71□□□□□ -0.21
COL6A3-202ENST00000347401 EXOSC10Q01780 885 aaKnown RBP13.71□□□□□ -0.21
COL6A3-202ENST00000347401 AGR3Q8TD06 166 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms