RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FANK1Q8TC84 345 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 APOL4Q9BPW4 351 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NIFKQ9BYG3 293 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FOXP1Q9H334 677 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 EHD3Q9NZN3 535 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4Q9UBX2 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TLL2Q9Y6L7 1015 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NEDD4P46934 1319 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MN1Q10571 1320 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SYNGAP1Q96PV0 1343 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 A0A087WWV3 80 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PPP1R3GB7ZBB8 358 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ACSL4O60488 711 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CCNT1O60563 726 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CALB1P05937 261 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 P4HBP07237 508 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 COL6A1P12109 1028 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BTF3P20290 206 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SLC26A3P40879 764 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ASMTP46597 345 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NPTX2P47972 431 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SLC12A2P55011 1212 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PPARAQ07869 468 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SSRP1Q08945 709 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ILF2Q12905 390 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TOP3AQ13472 1001 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SNAPC2Q13487 334 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PTPAQ15257 358 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 WDR44Q5JSH3 913 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TRAF7Q6Q0C0 670 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PAOXQ6QHF9 649 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RIPOR1Q6ZS17 1223 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 APTXQ7Z2E3 356 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SH3RF1Q7Z6J0 888 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 GPR180Q86V85 440 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 C2CD5Q86YS7 1000 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CDH26Q8IXH8 852 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PAGE5Q96GU1 130 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PHACTR3Q96KR7 559 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PSMB7Q99436 277 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SENP6Q9GZR1 1112 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NOL6Q9H6R4 1146 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 WASH6PQ9NQA3 447 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 IARS2Q9NSE4 1012 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TRMT6Q9UJA5 497 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CHKBQ9Y259 395 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 GSTTP1A0A1W2PQM5 241 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 OR5K3A6NET4 321 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SLC9A3R1O14745 358 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ZBTB39O15060 712 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TM9SF1O15321 606 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 STX7O15400 261 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CLOCKO15516 846 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 HOXA2O43364 376 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TAF5LO75529 589 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MICAL2O94851 1124 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MYL4P12829 197 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ATF7P17544 494 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TXNL4AP83876 142 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DPYDQ12882 1025 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BFSP1Q12934 665 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 METTL24Q5JXM2 366 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RANBP10Q6VN20 620 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 AACSQ86V21 672 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 JAMLQ86YT9 394 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 UNC5CLQ8IV45 518 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BBS7Q8IWZ6 715 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 VGLL2Q8N8G2 317 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TTLQ8NG68 377 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 EPS8L1Q8TE68 723 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PTCD3Q96EY7 689 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 OXNAD1Q96HP4 312 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CYTH2Q99418 400 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TUBGCP2Q9BSJ2 902 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FANCFQ9NPI8 374 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MAN1C1Q9NR34 630 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PKD2L2Q9NZM6 624 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TEKT2Q9UIF3 430 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 GGT7Q9UJ14 662 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BAG5Q9UL15 447 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 POLIQ9UNA4 740 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TARBP1Q13395 1621 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MEI4A8MW99 385 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 EEF2KO00418 725 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BUD23O43709 281 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DFNA5O60443 496 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CRTAPO75718 401 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NADKO95544 446 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CXCR2P25025 360 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NMT1P30419 496 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 POLD2P49005 469 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 YWHAGP61981 247 aaKnown RBP eCLIP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 HSP90AA4PQ58FG1 418 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FAM47EQ6ZV65 393 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SETD3Q86TU7 594 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TXNDC2Q86VQ3 553 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ARMC8Q8IUR7 673 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SLC26A7Q8TE54 656 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 C10orf82Q8WW14 230 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FAR2Q96K12 515 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms