RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 OTOL1A6NHN0 477 aaPredicted RBP16.7■□□□□ 0.26
CLN3-201ENST00000333496 TCF3P15923 654 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 SOX9P48436 509 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 KIF11P52732 1056 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 PLCB2Q00722 1185 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 FZD5Q13467 585 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 MTF1Q14872 753 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 UBXN2BQ14CS0 331 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 SGO2Q562F6 1265 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 MIIPQ5JXC2 388 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 TRIM65Q6PJ69 517 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 ANKRD52Q8NB46 1076 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CSGALNACT1Q8TDX6 532 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 SH3RF2Q8TEC5 729 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 TFAP2BQ92481 460 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 ZSWIM1Q9BR11 485 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 TSPAN16Q9UKR8 245 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 SCML2Q9UQR0 700 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 USP3Q9Y6I4 520 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 ATG2BQ96BY7 2078 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 FAM170BA6NMN3 283 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 TULP2O00295 520 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 GALR2O43603 387 aaPredicted RBP16.7■□□□□ 0.26
CLN3-201ENST00000333496 CALCAP01258 141 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 VDRP11473 427 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CD19P15391 556 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 PDE6CP51160 858 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 NUBP1P53384 320 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 MLLT6P55198 1093 aaPredicted RBP16.7■□□□□ 0.26
CLN3-201ENST00000333496 APBA1Q02410 837 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 MAN2A1Q16706 1144 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 GOLGA7BQ2TAP0 167 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CCDC183Q5T5S1 534 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 GJB7Q6PEY0 223 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 ZNF852Q6ZMS4 543 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 C11orf57Q6ZUT1 292 aaPredicted RBP16.7■□□□□ 0.26
CLN3-201ENST00000333496 FAM114A1Q8IWE2 563 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 ENOX1Q8TC92 643 aaKnown RBP16.7■□□□□ 0.26
CLN3-201ENST00000333496 PRRX2Q99811 253 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 OSBPL6Q9BZF3 934 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 EBF3Q9H4W6 596 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CCSER2Q9H7U1 834 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 OSER1Q9NX31 292 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CNTN6Q9UQ52 1028 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 CPQQ9Y646 472 aa16.7■□□□□ 0.26
CLN3-201ENST00000333496 GTPBP10A4D1E9 387 aaKnown RBP16.69■□□□□ 0.26
CLN3-201ENST00000333496 LEFTY2O00292 366 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 O00370 1275 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 CYP26A1O43174 497 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 COCHO43405 550 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 PAEPP09466 180 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 ARSAP15289 507 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 ZNF132P52740 706 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 RUNX3Q13761 415 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 PKDCCQ504Y2 493 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 HECTD3Q5T447 861 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 TXNDC11Q6PKC3 985 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 GBP6Q6ZN66 633 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 PIGZQ86VD9 579 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 DTWD2Q8NBA8 298 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 TTC16Q8NEE8 873 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 FAM3CQ92520 227 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 CHFRQ96EP1 664 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 ZFRQ96KR1 1074 aaKnown RBP16.69■□□□□ 0.26
CLN3-201ENST00000333496 TUBGCP2Q9BSJ2 902 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 UBXN6Q9BZV1 441 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 NMUR1Q9HB89 426 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 UBE2TQ9NPD8 197 aaPredicted RBP16.69■□□□□ 0.26
CLN3-201ENST00000333496 KIAA1257Q9ULG3 409 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 NFE2L3Q9Y4A8 694 aa16.69■□□□□ 0.26
CLN3-201ENST00000333496 KCNJ18B7U540 433 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 MAN2B1O00754 1011 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 MBL2P11226 248 aaPredicted RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 PON1P27169 355 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 CTHP32929 405 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 TUBP50607 506 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 KPNA1P52294 538 aaPredicted RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 PDE4CQ08493 712 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 KCNJ12Q14500 433 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 EXOC3L4Q17RC7 722 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 ITPRIPL2Q3MIP1 535 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 VWA3BQ502W6 1294 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 RAB41Q5JT25 222 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 CC2D1AQ6P1N0 951 aaPredicted RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 SASS6Q6UVJ0 657 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 RBBP8NLQ8NC74 664 aaPredicted RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 UBA3Q8TBC4 463 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 OSCP1Q8WVF1 389 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 CLDN23Q96B33 292 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 NELL2Q99435 816 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 LINC00597Q9H2U6 94 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 NDST4Q9H3R1 872 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 C8orf33Q9H7E9 229 aaPredicted RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 TLR8Q9NR97 1041 aaKnown RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 SMPD4Q9NXE4 827 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 NDRG2Q9UN36 371 aaKnown RBP16.68■□□□□ 0.26
CLN3-201ENST00000333496 WNT6Q9Y6F9 365 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 USP34Q70CQ2 3546 aa16.68■□□□□ 0.26
CLN3-201ENST00000333496 SPECC1L-ADORA2AF8WAN1 911 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 TLR5O60602 858 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms