RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 EPAS1Q99814 870 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 PORCNQ9H237 461 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 LRRC4CQ9HCJ2 640 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 AP3B1O00203 1094 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 PIAS1O75925 651 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 GRK2P25098 689 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 HOXD13P35453 343 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 LAMTOR4Q0VGL1 99 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 EFHC1Q5JVL4 640 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 LRRC74BQ6ZQY2 392 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ECHDC2Q86YB7 292 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 TRIM15Q9C019 465 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 SIK2Q9H0K1 926 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ACSS3Q9H6R3 686 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 hCG_1818297A0A087WSY0 165 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 FOXO6A8MYZ6 492 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 C2CD2LO14523 706 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CDH8P55286 799 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ACAP1Q15027 740 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 C6orf89Q6UWU4 347 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 RNF168Q8IYW5 571 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 C20orf96Q9NUD7 363 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CCDC78A2IDD5 438 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 SIGLEC16A6NMB1 481 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CXCL8P10145 99 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 GNAT1P11488 350 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 EEF1B2P24534 225 aaKnown RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CACNA2D1P54289 1103 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 DPY19L2Q6NUT2 758 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 DENND5BQ6ZUT9 1274 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 OTOAQ7RTW8 1153 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 SETD3Q86TU7 594 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ZC3H3Q8IXZ2 948 aaKnown RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 DPP3Q9NY33 737 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 HACL1Q9UJ83 578 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 A0A1W2PPM1 405 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 EEF2KO00418 725 aaKnown RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 STAG3L1P0CL83 205 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 GLRA2P23416 452 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 PTDSS1P48651 473 aaKnown RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 MMP14P50281 582 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 RPL10AP62906 217 aaKnown RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 IRGCQ6NXR0 463 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 BBS12Q6ZW61 710 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 ACOT1Q86TX2 421 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 CCDC33Q8N5R6 958 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 APPL2Q8NEU8 664 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 ATP6V1E2Q96A05 226 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 TMA16Q96EY4 203 aaKnown RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 SLC4A7Q9Y6M7 1214 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 PLA2G6O60733 806 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 PTGER2P43116 358 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 CXCL9Q07325 125 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 OR5B17Q8NGF7 314 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 RMDN2Q96LZ7 410 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 ZNF317Q96PQ6 595 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 ILKAPQ9H0C8 392 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-201ENST00000323668 SOX13Q9UN79 622 aa15.27■□□□□ 0.04
TCOF1-201ENST00000323668 HSD17B4P51659 736 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 RTP1P59025 263 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 MRPL1Q9BYD6 325 aaKnown RBP15.27■□□□□ 0.03
TCOF1-201ENST00000323668 THAP1Q9NVV9 213 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 CRYBG1Q9Y4K1 1723 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 CHEK2O96017 543 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 RALBP11234 206 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 GMPSP49915 693 aaPredicted RBP15.27■□□□□ 0.03
TCOF1-201ENST00000323668 CYTH1Q15438 398 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 EME1Q96AY2 570 aa15.27■□□□□ 0.03
TCOF1-201ENST00000323668 RPL26L1Q9UNX3 145 aaKnown RBP15.27■□□□□ 0.03
TCOF1-201ENST00000323668 TMEM191CA6NGB0 347 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 WNT10BO00744 389 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 BANF1O75531 89 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 CCDC15Q0P6D6 951 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 PLEKHA7Q6IQ23 1121 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 OR6P1Q8NGX9 317 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 TBCBQ99426 244 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 KCNK4Q9NYG8 393 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.26■□□□□ 0.03
TCOF1-201ENST00000323668 TGM2P21980 687 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 MMP8P22894 467 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 RPS12P25398 132 aaKnown RBP15.26■□□□□ 0.03
TCOF1-201ENST00000323668 ATICP31939 592 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 DSG3P32926 999 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 EMC10Q5UCC4 262 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 SH3BP5LQ7L8J4 393 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 POLNQ7Z5Q5 900 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 LRMDAQ9H2I8 198 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 PLEKHA5Q9HAU0 1116 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 LGALS13Q9UHV8 139 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 SLC39A10Q9ULF5 831 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 POLIQ9UNA4 740 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 MYH6P13533 1939 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 TRDMT1O14717 391 aaKnown RBP15.26■□□□□ 0.03
TCOF1-201ENST00000323668 MCF2P10911 925 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 PTP4A2Q12974 167 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 ASAP3Q8TDY4 903 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 SUN2Q9UH99 717 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 CPSF3Q9UKF6 684 aaKnown RBP15.26■□□□□ 0.03
TCOF1-201ENST00000323668 APOEP02649 317 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms