RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 ECHS1P30084 290 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 FAM47CQ5HY64 1035 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PPP1R2P3Q6NXS1 205 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 ANKS1BQ7Z6G8 1248 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 BEST2Q8NFU1 509 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 IFT43Q96FT9 208 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 ZWILCHQ9H900 591 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 MRPL47Q9HD33 250 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PARVAQ9NVD7 372 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 NOVA2Q9UNW9 492 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PHF24Q9UPV7 400 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 SNX9Q9Y5X1 595 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 SCINQ9Y6U3 715 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 TTI1O43156 1089 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 CREB3O43889 395 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 HMGCRP04035 888 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PFKMP08237 780 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 GSTA2P09210 222 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 VDRP11473 427 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 P4HA1P13674 534 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 CST5P28325 142 aaPredicted RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 GPD2P43304 727 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 EIF3BP55884 814 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 KCNJ2P63252 427 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 BNIP1Q12981 228 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 LLGL1Q15334 1064 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PABPC1LQ4VXU2 614 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 TTC27Q6P3X3 843 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 ASRGL1Q7L266 308 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 SLC13A5Q86YT5 568 aaPredicted RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 LRRC52Q8N7C0 313 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 C12orf29Q8N999 325 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 MCEEQ96PE7 176 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 LPIN3Q9BQK8 851 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 FAM167BQ9BTA0 163 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 AGO3Q9H9G7 860 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 SPC25Q9HBM1 224 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 SAMD15Q9P1V8 674 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PARP2Q9UGN5 583 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 UBQLN1Q9UMX0 589 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 ST3GAL5Q9UNP4 418 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 ERBB2P04626 1255 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 FGFR1P11362 822 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 SLC1A1P43005 524 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 MSH2P43246 934 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 GJA8P48165 433 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 AFF1P51825 1210 aaKnown RBP13.66□□□□□ -0.22
CPNE1-201ENST00000317677 MAGOHP61326 146 aaKnown RBP13.66□□□□□ -0.22
CPNE1-201ENST00000317677 CNGA2Q16280 664 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 SOWAHAQ2M3V2 549 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 TWF2Q6IBS0 349 aaKnown RBP13.66□□□□□ -0.22
CPNE1-201ENST00000317677 DDX42Q86XP3 938 aaKnown RBP eCLIP13.66□□□□□ -0.22
CPNE1-201ENST00000317677 JOSD2Q8TAC2 188 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 UBA3Q8TBC4 463 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 MAGOHBQ96A72 148 aaKnown RBP13.66□□□□□ -0.22
CPNE1-201ENST00000317677 ZFP42Q96MM3 310 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 UNC93B1Q9H1C4 597 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 SLITRK6Q9H5Y7 841 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 PCMTD2Q9NV79 361 aa13.66□□□□□ -0.22
CPNE1-201ENST00000317677 MED7O43513 233 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 ACADSP16219 412 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 GBP1P32455 592 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 MAN1A1P33908 653 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 SKIV2L2P42285 1042 aaKnown RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 COPS2P61201 443 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 ZNF618Q5T7W0 954 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 SEL1L2Q5TEA6 688 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 PRPF38BQ5VTL8 546 aaKnown RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 DNAJC24Q6P3W2 148 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 XYLT1Q86Y38 959 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 GSTCDQ8NEC7 633 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 KBTBD7Q8WVZ9 684 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 HEXIM2Q96MH2 286 aaKnown RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 SYT15Q9BQS2 421 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 TRIM51Q9BSJ1 452 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 NEUROG2Q9H2A3 272 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 VCXQ9H320 206 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 DMAP1Q9NPF5 467 aaPredicted RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 CACNG4Q9UBN1 327 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 USTQ9Y2C2 406 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 F8VP50 259 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 M0QYV0 167 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 TPP2P29144 1249 aaPredicted RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 PTGIRP43119 386 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 KLC1Q07866 573 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 TRIM71Q2Q1W2 868 aaKnown RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 ATP13A4Q4VNC1 1196 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 SGO2Q562F6 1265 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 TXNRD3NBQ6F5E7 133 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 LIMS2Q7Z4I7 341 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 C18orf8Q96DM3 657 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 NT5C1AQ9BXI3 368 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 NSRP1Q9H0G5 558 aaKnown RBP13.65□□□□□ -0.22
CPNE1-201ENST00000317677 DPEP3Q9H4B8 488 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 ECT2Q9H8V3 914 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 PIDD1Q9HB75 910 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 TSPAN16Q9UKR8 245 aa13.65□□□□□ -0.22
CPNE1-201ENST00000317677 GOLGA8SH3BPF8 625 aa13.64□□□□□ -0.23
CPNE1-201ENST00000317677 FSCN2O14926 492 aa13.64□□□□□ -0.23
CPNE1-201ENST00000317677 MGEA5O60502 916 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms