RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 WWOXQ9NZC7 414 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 PLEKP08567 350 aaPredicted RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 CARSP49589 748 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 ERAP2Q6P179 960 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 LGI2Q8N0V4 545 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 OMDQ99983 421 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 AAR2Q9Y312 384 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 YDJCA8MPS7 323 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 H2AFYO75367 372 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 GJB1P08034 283 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 POLR2EP19388 210 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 CAMK2GQ13555 558 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 ACOX1Q15067 660 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 NT5DC3Q86UY8 548 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SPG21Q9NZD8 308 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TRAF3IP3Q9Y228 551 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TMEM253P0C7T8 217 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 RAP1GDS1P52306 607 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 DDX39BQ13838 428 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 C15orf52Q6ZUT6 534 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 TAGAPQ8N103 731 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SLAIN1Q8ND83 568 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 MKL1Q969V6 931 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 FAM50BQ9Y247 325 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 ASTN2O75129 1339 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 TRAV19A0A0A6YYK7 116 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 ADCY6O43306 1168 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TRIM16O95361 564 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 HIST2H2ACQ16777 129 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 HIST2H2AA3Q6FI13 130 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 KRT80Q6KB66 452 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 MIR1-1HGQ9H1L0 117 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 JCHAINP01591 159 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 GYPCP04921 128 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SPRP35270 261 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 REM2Q8IYK8 340 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 TMC2Q8TDI7 906 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TMA16Q96EY4 203 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 ANLNQ9NQW6 1124 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 NCF1BA6NI72 391 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 NCF1CA8MVU1 366 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 MYL2P10916 166 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 NCF1P14598 390 aaPredicted RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 GGCXP38435 758 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TUBP50607 506 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 MTFR1Q15390 333 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 FAM110CQ1W6H9 321 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 GRAMD1BQ3KR37 738 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 POM121L1PQ3SYA9 428 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SPRYD7Q5W111 196 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 WSCD1Q658N2 575 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 LRRC1Q9BTT6 524 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 GIMAP4Q9NUV9 329 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 INTS13Q9NVM9 706 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 ZFP69BQ9UJL9 534 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SLC27A5Q9Y2P5 690 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 CRY2Q49AN0 593 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 EARS2Q5JPH6 523 aaKnown RBP13.98□□□□□ -0.17
RFFL-201ENST00000315249 ABHD8Q96I13 439 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 TLE6Q9H808 572 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 MAN1C1Q9NR34 630 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 SUFUQ9UMX1 484 aa13.98□□□□□ -0.17
RFFL-201ENST00000315249 NTRK3Q16288 839 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 ANKRD23Q86SG2 305 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 ASB7Q9H672 318 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 RAMP2O60895 175 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 CAND2O75155 1236 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 PTPN7P35236 360 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 TFDP3Q5H9I0 405 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 OTUB1Q96FW1 271 aaPredicted RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 EPC1Q9H2F5 836 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 KBTBD4Q9NVX7 518 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 PEX10O60683 326 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 CD44P16070 742 aaKnown RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 SOX11P35716 441 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 PABPC1LQ4VXU2 614 aaKnown RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 KIAA1324Q6UXG2 1013 aaKnown RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 SUSD6Q92537 303 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 CNPY3Q9BT09 278 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 PNMA8BQ9ULN7 279 aaPredicted RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 CTCFP49711 727 aaPredicted RBP13.97□□□□□ -0.17
RFFL-201ENST00000315249 PKNOX2Q96KN3 472 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 CCDC3Q9BQI4 270 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 PORCNQ9H237 461 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 FAM96AQ9H5X1 160 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 POU4F1Q01851 419 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 CLPBQ9H078 707 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 ATP13A1Q9HD20 1204 aa13.97□□□□□ -0.17
RFFL-201ENST00000315249 ADH1AP07327 375 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 STAT4Q14765 748 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 LONRF1Q17RB8 773 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 MRNIPQ6NTE8 343 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 NT5DC4Q86YG4 428 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 UPF1Q92900 1129 aaKnown RBP eCLIP13.96□□□□□ -0.179e-7■■■■□ 26.6
RFFL-201ENST00000315249 TRABDQ9H4I3 376 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 ZMYND8Q9ULU4 1186 aaPredicted RBP13.96□□□□□ -0.17
RFFL-201ENST00000315249 MROH9Q5TGP6 573 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 TMCO5AQ8N6Q1 288 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 CAMKK2Q96RR4 588 aa13.96□□□□□ -0.17
RFFL-201ENST00000315249 NSMCE4AQ9NXX6 385 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms