RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TBC1D30Q9Y2I9 924 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MDM4O15151 490 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 IL32P24001 234 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ALDH4A1P30038 563 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC9A3P48764 834 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PTSQ03393 145 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CARNMT1Q8N4J0 409 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MYLPFQ96A32 169 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 HIPK2Q9H2X6 1198 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SNRKQ9NRH2 765 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ECHDC1Q9NTX5 307 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 NDUFAF4Q9P032 175 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGEF35A5YM69 484 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 F9P00740 461 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 HK2P52789 917 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RAD23AP54725 363 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 UGT2B15P54855 530 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TAS2R39P59534 338 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TOP3AQ13472 1001 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MADCAM1Q13477 382 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 DNASE1L3Q13609 305 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 XKRXQ6PP77 449 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PODNQ7Z5L7 613 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CBWD2Q8IUF1 395 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC35F6Q8N357 371 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 KIAA1958Q8N8K9 716 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ATAD1Q8NBU5 361 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TESCQ96BS2 214 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CHIAQ9BZP6 476 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RACGAP1Q9H0H5 632 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CST11Q9H112 138 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PABPC3Q9H361 631 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SAYSD1Q9NPB0 183 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 UPB1Q9UBR1 384 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHA12Q9UN75 941 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PRSS44E7EML9 344 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 C6orf229H3BNL8 230 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ZBTB5O15062 677 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PHGDHO43175 533 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MFSD11O43934 449 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CCNT1O60563 726 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 IGFBP1P08833 259 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PABPC1P11940 636 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 GUCY1A2P33402 732 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 EIF4A3P38919 411 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CHN2P52757 468 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RGS21Q2M5E4 152 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SGO1Q5FBB7 561 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PCID2Q5JVF3 399 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RWDD4Q6NW29 188 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CYB5R4Q7L1T6 521 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 OR5T1Q8NG75 326 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TBC1D15Q8TC07 691 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 UTP15Q8TED0 518 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF75CPQ92670 426 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PPP2R3CQ969Q6 453 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 FBXO28Q9NVF7 368 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 COMMD8Q9NX08 183 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 DCAF16Q9NXF7 216 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SH3BP4Q9P0V3 963 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 FGD6Q6ZV73 1430 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC16A3O15427 465 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CLN5O75503 358 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 WDPCPO95876 746 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TCF4P15884 667 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RAP1GAPP47736 663 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PPP2R2BQ00005 443 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 NEK8Q86SG6 692 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 HESX1Q9UBX0 185 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 GTF3C4Q9UKN8 822 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHB13Q9Y5F0 798 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TTC41PQ6P2S7 1318 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MSH4O15457 936 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 NR1I2O75469 434 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PRKCBP05771 671 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 RXRAP19793 462 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ATP6V1B2P21281 511 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MAGEB1P43366 347 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 NAB1Q13506 487 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PRKD1Q15139 912 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZFP69Q49AA0 526 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC16A9Q7RTY1 509 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZC3H7AQ8IWR0 971 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 KLF6Q99612 283 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 LPIN3Q9BQK8 851 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 NUP85Q9BW27 656 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SEMA3GQ9NS98 782 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 COQ3Q9NZJ6 369 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PTBP2Q9UKA9 531 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 VIRMAQ69YN4 1812 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 LOC100506127A0A0U1RQW1 187 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 GRXCR2A6NFK2 248 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 HMGCRP04035 888 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PRKAR1AP10644 381 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 JAK1P23458 1154 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 UQCRC1P31930 480 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 NUDT2P50583 147 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 EEF1A1P68104 462 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 EEF1A1P5Q5VTE0 462 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MZT2AQ6P582 158 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms