RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CD58P19256 250 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 CNR2P34972 360 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 MAP3K7CLP57077 242 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 FBXO43Q4G163 708 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 WDR5BQ86VZ2 330 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 DDX42Q86XP3 938 aaKnown RBP eCLIP20.68■□□□□ 0.9
LIME1-201ENST00000309546 CRYBG2Q8N1P7 616 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 GPR161Q8N6U8 529 aaKnown RBP20.68■□□□□ 0.9
LIME1-201ENST00000309546 ZMIZ2Q8NF64 920 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 EZH1Q92800 747 aaPredicted RBP20.68■□□□□ 0.9
LIME1-201ENST00000309546 TWNKQ96RR1 684 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 NIF3L1Q9GZT8 377 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 NACA2Q9H009 215 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 APOBEC3GQ9HC16 384 aaKnown RBP20.68■□□□□ 0.9
LIME1-201ENST00000309546 TMEM8AQ9HCN3 771 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 RMND1Q9NWS8 449 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 FRYLO94915 3013 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 RALGAPA1Q6GYQ0 2036 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 MYOFQ9NZM1 2061 aa20.68■□□□□ 0.9
LIME1-201ENST00000309546 SLC9A3R1O14745 358 aaPredicted RBP20.67■□□□□ 0.9
LIME1-201ENST00000309546 TNFRSF10BO14763 440 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 COCHO43405 550 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 CYP17A1P05093 508 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 FAM200BP0CF97 657 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 HOXA6P31267 233 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 SPEM2Q0P670 501 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 EDRF1Q3B7T1 1238 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 HECTD3Q5T447 861 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 FMR1NBQ8N0W7 255 aaPredicted RBP20.67■□□□□ 0.9
LIME1-201ENST00000309546 HHIPQ96QV1 700 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 CCSER2Q9H7U1 834 aa20.67■□□□□ 0.9
LIME1-201ENST00000309546 EML5Q05BV3 1969 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 EPB41P11171 864 aaKnown RBP20.66■□□□□ 0.9
LIME1-201ENST00000309546 OPRD1P41143 372 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 SEC13P55735 322 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 NUCB2P80303 420 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 INCA1Q0VD86 236 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 KRT39Q6A163 491 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 ERCC4Q92889 916 aaPredicted RBP20.66■□□□□ 0.9
LIME1-201ENST00000309546 ACDQ96AP0 544 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 NT5C1AQ9BXI3 368 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 CYP3A43Q9HB55 503 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 PARD6AQ9NPB6 346 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 SH3BP1Q9Y3L3 701 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 WDR87Q6ZQQ6 2873 aa20.66■□□□□ 0.9
LIME1-201ENST00000309546 DMXL1Q9Y485 3027 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 CETN3O15182 167 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 IRF1P10914 325 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 PRCPP42785 496 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 MXI1P50539 228 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 ENPEPQ07075 957 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 DHCR24Q15392 516 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 RSPO4Q2I0M5 234 aaPredicted RBP20.65■□□□□ 0.9
LIME1-201ENST00000309546 ERMP1Q7Z2K6 904 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 TSG101Q99816 390 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 FBXO44Q9H4M3 255 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 CSNK1G1Q9HCP0 422 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 COMMD8Q9NX08 183 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 IL37Q9NZH6 218 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 DCHS1Q96JQ0 3298 aa20.65■□□□□ 0.9
LIME1-201ENST00000309546 SPAG17Q6Q759 2223 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 RPP40O75818 363 aaKnown RBP20.64■□□□□ 0.89
LIME1-201ENST00000309546 RETP07949 1114 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 CCDC192P0DO97 292 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 GTF2H1P32780 548 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 TUBP50607 506 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 LMNB2Q03252 620 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 DMC1Q14565 340 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 PUM1Q14671 1186 aaKnown RBP eCLIP20.64■□□□□ 0.89
LIME1-201ENST00000309546 GAB4Q2WGN9 574 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 ZNF394Q53GI3 561 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 DCAF17Q5H9S7 520 aaPredicted RBP20.64■□□□□ 0.89
LIME1-201ENST00000309546 ZNF658Q5TYW1 1059 aaPredicted RBP20.64■□□□□ 0.89
LIME1-201ENST00000309546 TCERG1LQ5VWI1 586 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 CLEC20AQ6ZU45 233 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 GPRIN1Q7Z2K8 1008 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 DGLUCYQ7Z3D6 616 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 ADGRG2Q8IZP9 1017 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 FAM160A2Q8N612 972 aaPredicted RBP20.64■□□□□ 0.89
LIME1-201ENST00000309546 GAB3Q8WWW8 586 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 CYFIP2Q96F07 1278 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 HNRNPABQ99729 332 aaKnown RBP20.64■□□□□ 0.89
LIME1-201ENST00000309546 TBC1D14Q9P2M4 693 aa20.64■□□□□ 0.89
LIME1-201ENST00000309546 FAM92AA1XBS5 289 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 TLR5O60602 858 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 CILPO75339 1184 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 SMC2O95347 1197 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 ADH1CP00326 375 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 ZDHHC11BP0C7U3 371 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 FOXK2Q01167 660 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 C2orf27AQ580R0 203 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 SNX30Q5VWJ9 437 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 SYT13Q7L8C5 426 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 KIAA1958Q8N8K9 716 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 SEMA4DQ92854 862 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 SMARCE1Q969G3 411 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 ZFRQ96KR1 1074 aaKnown RBP20.63■□□□□ 0.89
LIME1-201ENST00000309546 GSDMAQ96QA5 445 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 DNAI2Q9GZS0 605 aa20.63■□□□□ 0.89
LIME1-201ENST00000309546 TLR8Q9NR97 1041 aaKnown RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms