RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TCRBV7S3A2A0A539 114 aa12□□□□□ -0.49
CUX1-202ENST00000292538 HGSO14964 777 aaPredicted RBP12□□□□□ -0.49
CUX1-202ENST00000292538 VIMP08670 466 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 CD52P31358 61 aa12□□□□□ -0.49
CUX1-202ENST00000292538 CLCNKBP51801 687 aa12□□□□□ -0.49
CUX1-202ENST00000292538 ADAM17P78536 824 aa12□□□□□ -0.49
CUX1-202ENST00000292538 ADIGQ0VDE8 80 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SMAD1Q15797 465 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 RHBDF2Q6PJF5 856 aa12□□□□□ -0.49
CUX1-202ENST00000292538 OLFML1Q6UWY5 402 aa12□□□□□ -0.49
CUX1-202ENST00000292538 ALKAL1Q6UXT8 129 aa12□□□□□ -0.49
CUX1-202ENST00000292538 DSTYKQ6XUX3 929 aa12□□□□□ -0.49
CUX1-202ENST00000292538 CYP4X1Q8N118 509 aa12□□□□□ -0.49
CUX1-202ENST00000292538 SLC35F5Q8WV83 523 aa12□□□□□ -0.49
CUX1-202ENST00000292538 INTS9Q9NV88 658 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 EXOC1LA0A1B0GW35 172 aa12□□□□□ -0.49
CUX1-202ENST00000292538 DNALI1O14645 258 aaPredicted RBP12□□□□□ -0.49
CUX1-202ENST00000292538 KCNN4O15554 427 aa12□□□□□ -0.49
CUX1-202ENST00000292538 DESP17661 470 aa12□□□□□ -0.49
CUX1-202ENST00000292538 CCND3P30281 292 aaPredicted RBP12□□□□□ -0.49
CUX1-202ENST00000292538 COPS2P61201 443 aa12□□□□□ -0.49
CUX1-202ENST00000292538 POLNQ7Z5Q5 900 aa12□□□□□ -0.49
CUX1-202ENST00000292538 OSTM1Q86WC4 334 aa12□□□□□ -0.49
CUX1-202ENST00000292538 PYROXD2Q8N2H3 581 aa12□□□□□ -0.49
CUX1-202ENST00000292538 LRRC52Q8N7C0 313 aa12□□□□□ -0.49
CUX1-202ENST00000292538 ZNF560Q96MR9 790 aa12□□□□□ -0.49
CUX1-202ENST00000292538 AGO3Q9H9G7 860 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 XPNPEP3Q9NQH7 507 aa12□□□□□ -0.49
CUX1-202ENST00000292538 MIOSQ9NXC5 875 aa12□□□□□ -0.49
CUX1-202ENST00000292538 KIAA1257Q9ULG3 409 aa12□□□□□ -0.49
CUX1-202ENST00000292538 RRP15Q9Y3B9 282 aaKnown RBP12□□□□□ -0.49
CUX1-202ENST00000292538 TRIP12Q14669 1992 aaPredicted RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 PLXNA1Q9UIW2 1896 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 HAS3O00219 553 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 PTGESO14684 152 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 XPOTO43592 962 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 AOC2O75106 756 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 AVILO75366 819 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 ASGR1P07306 291 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 YY1P25490 414 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 RPL22P35268 128 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 GABRB2P47870 512 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 FCGRTP55899 365 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 BCAR1P56945 870 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 MRPS6P82932 125 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 OASLQ15646 514 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 KCNA10Q16322 511 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 HIBCHQ6NVY1 386 aaPredicted RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.99□□□□□ -0.49
CUX1-202ENST00000292538 B3GALNT2Q8NCR0 500 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 BBOF1Q8ND07 529 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 ZNF473Q8WTR7 871 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 USP6NLQ92738 828 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 MTG1Q9BT17 334 aaPredicted RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 SNRNP25Q9BV90 132 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 RHOBTB2Q9BYZ6 727 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 TRMT13Q9NUP7 481 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 GMNCA6NCL1 334 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 PIRO00625 290 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 DUSP11O75319 330 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 SPAG7O75391 227 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 CHRNA1P02708 482 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 PITX1P78337 314 aaPredicted RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 ROR1Q01973 937 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 BST2Q10589 180 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 DPYSL3Q14195 570 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 SV2CQ496J9 727 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 RSPH3Q86UC2 560 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 PIGZQ86VD9 579 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 MAP7D3Q8IWC1 876 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 MYCBPAPQ8TBZ2 947 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 FNIP1Q8TF40 1166 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 KCNK16Q96T55 309 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 TSPYL2Q9H2G4 693 aaPredicted RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 LRRC4Q9HBW1 653 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 FAM105AQ9NUU6 356 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 DDX43Q9NXZ2 648 aaKnown RBP11.99□□□□□ -0.49
CUX1-202ENST00000292538 SLC12A6Q9UHW9 1150 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 SCN4AP35499 1836 aa11.99□□□□□ -0.49
CUX1-202ENST00000292538 CREB3O43889 395 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 B3GAT3O94766 335 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 SLC10A3P09131 477 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 KRT15P19012 456 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 AXLP30530 894 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 SSTR1P30872 391 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 SLC8A3P57103 927 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 CAV1Q03135 178 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 IFT88Q13099 833 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 QPCTQ16769 361 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 BBS12Q6ZW61 710 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 EXOC3L1Q86VI1 746 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 ANKRD52Q8NB46 1076 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 CCDC77Q9BR77 488 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 CEP41Q9BYV8 373 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 RSAD1Q9HA92 442 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 XPO7Q9UIA9 1087 aaKnown RBP11.98□□□□□ -0.49
CUX1-202ENST00000292538 CAPN9O14815 690 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 THP07101 528 aa11.98□□□□□ -0.49
CUX1-202ENST00000292538 PRKAR2AP13861 404 aaKnown RBP11.98□□□□□ -0.49
CUX1-202ENST00000292538 BCAT1P54687 386 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms