RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 CDR2LQ86X02 465 aaPredicted RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 NUP93Q8N1F7 819 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 RXFP2Q8WXD0 754 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 ABI2Q9NYB9 513 aaPredicted RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 FAM86B1E9PN63 330 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 RBP1P09455 135 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 FAM86B2P0C5J1 330 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 THPOP40225 353 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 RAB27AP51159 221 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 STX19Q8N4C7 294 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 PCSK9Q8NBP7 692 aaKnown RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 DTNBP1Q96EV8 351 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CDK5RAP1Q96SZ6 601 aaKnown RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 INTS13Q9NVM9 706 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 KLK14Q9P0G3 267 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 EVPLLA8MZ36 301 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CAND2O75155 1236 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 EZH2Q15910 746 aaKnown RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 MAP4K3Q8IVH8 894 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 FBXO16Q8IX29 292 aaPredicted RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CLEC4FQ8N1N0 589 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 TMEM106CQ9BVX2 250 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CRLS1Q9UJA2 301 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 GAKO14976 1311 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 IRF1P10914 325 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 NQO1P15559 274 aaKnown RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 FOXD4Q12950 439 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 CYTH1Q15438 398 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ZC3H12BQ5HYM0 836 aaKnown RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 FAM162AQ96A26 154 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 RPRD1AQ96P16 312 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 DMGDHQ9UI17 866 aaKnown RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 SLC4A7Q9Y6M7 1214 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 VPS26AO75436 327 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 B3GAT3O94766 335 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF135P52742 658 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 MKRN4PQ13434 485 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 FBXO47Q5MNV8 452 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 DENND1BQ6P3S1 775 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 MTMR8Q96EF0 704 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 VTA1Q9NP79 307 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 PRDM5Q9NQX1 630 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 TBC1D13Q9NVG8 400 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 HEY2Q9UBP5 337 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 APPL1Q9UKG1 709 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 EIF3LQ9Y262 564 aaKnown RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 STRNO43815 780 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 EFCAB14O75071 495 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 PMPCBO75439 489 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 KCNA3P22001 575 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 NR2C2P49116 596 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ALDH7A1P49419 539 aaKnown RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 SKOR1P84550 965 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 HIST2H2ACQ16777 129 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ERMARDQ5T6L9 678 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 HIST2H2AA3Q6FI13 130 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF410Q86VK4 478 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 BRSK2Q8IWQ3 736 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 WNK4Q96J92 1243 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 NMRK1Q9NWW6 199 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 KANSL1LA0AUZ9 987 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 MAN1A2O60476 641 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 PRKAA2P54646 552 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 NFE2Q16621 373 aaPredicted RBP13.22□□□□□ -0.29
PTCD1-201ENST00000292478 KCNT1Q5JUK3 1230 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 GLRA4Q5JXX5 417 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 FOXR2Q6PJQ5 311 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 TTC30AQ86WT1 665 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 MTFR1LQ9H019 292 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 ADNPQ9H2P0 1102 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 EFCAB1Q9HAE3 211 aa13.22□□□□□ -0.29
PTCD1-201ENST00000292478 MPOP05164 745 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 GHRP10912 638 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 CALB2P22676 271 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 ITGA9Q13797 1035 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF606Q8WXB4 792 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 NOD2Q9HC29 1040 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 SYTL2Q9HCH5 934 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 CYP3A7-CYP3A51PA0A087WV96 503 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 A0A087WZ62 844 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 ACKR2O00590 384 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 DNALI1O14645 258 aaPredicted RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 APOA1P02647 267 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 ATP5BP06576 529 aaKnown RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 GLI1P08151 1106 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 CYP3A7P24462 503 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 MGAT5Q09328 741 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 ELAVL2Q12926 359 aaKnown RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 POLD3Q15054 466 aaPredicted RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 KIF2BQ8N4N8 673 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 FBXO32Q969P5 355 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 FDXACB1Q9BRP7 624 aaPredicted RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 SOX13Q9UN79 622 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 PRKCIP41743 596 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 CDH18Q13634 790 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 DACT2Q5SW24 774 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 NBPF12Q5TAG4 269 aaPredicted RBP13.21□□□□□ -0.29
PTCD1-201ENST00000292478 FAXCQ5TGI0 409 aa13.21□□□□□ -0.29
PTCD1-201ENST00000292478 APOBEC3HQ6NTF7 200 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms