RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 CPA5Q8WXQ8 436 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 TMEM117Q9H0C3 514 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 ERVV-1B6SEH8 477 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 SH2D3CQ8N5H7 860 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 KATNAL1Q9BW62 490 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 PDGFCQ9NRA1 345 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 PHF11Q9UIL8 331 aa9.01□□□□□ -0.97
NIPBL-201ENST00000282516 SDR42E2A6NKP2 422 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ATG7O95352 703 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 FOSL2P15408 326 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 IL5RAQ01344 420 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CCNIQ14094 377 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ERFEQ4G0M1 354 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 PLA2G4FQ68DD2 849 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 HAUS6Q7Z4H7 955 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 SLC44A2Q8IWA5 706 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 DBR1Q9UK59 544 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 ARAP3Q8WWN8 1544 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 A0A087X0T9 212 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 SLCO1B7G3V0H7 640 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 MAGEB2O15479 319 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CYP2D6P10635 497 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TXNRD1Q16881 649 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 KCTD17Q8N5Z5 321 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CDK5RAP1Q96SZ6 601 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 LRRC1Q9BTT6 524 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TLR7Q9NYK1 1049 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 TPRKBQ9Y3C4 175 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 VPS4BO75351 444 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TNFAIP8O95379 198 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 STAU1O95793 577 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 ODC1P11926 461 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 NQO1P15559 274 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 GPD1P21695 349 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 NFIAQ12857 509 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 MAD2L1Q13257 205 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 TMEM132BQ14DG7 1078 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CAMK1DQ8IU85 385 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ARID3BQ8IVW6 561 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 BARHL2Q9NY43 387 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CHORDC1Q9UHD1 332 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 CDK12Q9NYV4 1490 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 CCDC182A6NF36 153 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 DGAT1O75907 488 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TSPAN9O75954 239 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 SNRPFP62306 86 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 PLCL1Q15111 1095 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 SNRNP35Q16560 246 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 KYQ8NBH2 561 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 LBHD1Q9BQE6 289 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 MTA3Q9BTC8 594 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 C1orf50Q9BV19 199 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 NEDD4P46934 1319 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 BCLAF3A2AJT9 711 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 EFCAB10A6NFE3 127 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 GLRA3O75311 464 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CNTFP26441 200 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CPA2P48052 419 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 PTGISQ16647 500 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 FAM196AQ6ZSG2 479 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 LRRC6Q86X45 466 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TTLL6Q8N841 843 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TRPC4Q9UBN4 977 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 KDM6AO15550 1401 aaPredicted RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 SMNDC1O75940 238 aaKnown RBP eCLIP9□□□□□ -0.978e-9■■■□□ 17
NIPBL-201ENST00000282516 ALOX12P18054 663 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ARID5BQ14865 1188 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 EFHC1Q5JVL4 640 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 NEK5Q6P3R8 708 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ZNF677Q86XU0 584 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 B3GALNT2Q8NCR0 500 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 WRNIP1Q96S55 665 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 PUS7LQ9H0K6 701 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 DCLRE1BQ9H816 532 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 AAASQ9NRG9 546 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TTC23Q5W5X9 447 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 HLA-DQA1Q5Y7H0 255 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CCDC33Q8N5R6 958 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 CCDC185Q8N715 623 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 ATP7BP35670 1465 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 S100A6P06703 90 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 TRAF3Q13114 568 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 HAVCR1Q96D42 359 aa9□□□□□ -0.97
NIPBL-201ENST00000282516 AAR2Q9Y312 384 aaKnown RBP9□□□□□ -0.97
NIPBL-201ENST00000282516 FAM92AA1XBS5 289 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SKAP2O75563 359 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 FAM200BP0CF97 657 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 IRF1P10914 325 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 MSH3P20585 1137 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CORO7P57737 925 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 DCAF6Q58WW2 860 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RBBP8NLQ8NC74 664 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 OR6J1Q8NGC5 347 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 C9orf72Q96LT7 481 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SAE1Q9UBE0 346 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TBX22Q9Y458 520 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 EYA4O95677 639 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 HK2P52789 917 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PDIA6Q15084 440 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 BTN2A1Q7KYR7 527 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms