RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 KIF20AO95235 890 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 ASS1P00966 412 aaKnown RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 OAS1P00973 400 aaKnown RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 RETP07949 1114 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 YWHAQP27348 245 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 NR1H3Q13133 447 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 SRSF5Q13243 272 aaKnown RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 NFIL3Q16649 462 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 PROX2Q3B8N5 592 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 FBXO43Q4G163 708 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 CEP135Q66GS9 1140 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 KRBA2Q6ZNG9 492 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 WDR5BQ86VZ2 330 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 FUKQ8N0W3 1084 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 NUP93Q8N1F7 819 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 CRYBG2Q8N1P7 616 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 EZH1Q92800 747 aaPredicted RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 CD101Q93033 1021 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 EXOC4Q96A65 974 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 TNIP3Q96KP6 325 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 SLITRK1Q96PX8 696 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 PARD6AQ9NPB6 346 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 POLR3BQ9NW08 1133 aaPredicted RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 CHORDC1Q9UHD1 332 aaPredicted RBP10.33□□□□□ -0.76
VPS41-201ENST00000265745 MAPK8IP1Q9UQF2 711 aa10.33□□□□□ -0.76
VPS41-201ENST00000265745 CCDC163A0A0D9SF12 145 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 TNFRSF10BO14763 440 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 AKAP3O75969 853 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 RTN3O95197 1032 aaPredicted RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 NFATC1O95644 943 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 ABL1P00519 1130 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 P4HA1P13674 534 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 NR2F2P24468 414 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 VAMP7P51809 220 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 MCCD1P59942 119 aaPredicted RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 LMNB2Q03252 620 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 RSPO4Q2I0M5 234 aaPredicted RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 GAB4Q2WGN9 574 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 SNX30Q5VWJ9 437 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 SCARA5Q6ZMJ2 495 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 PRR23BQ6ZRT6 265 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 ACOT1Q86TX2 421 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 FAM35AQ86V20 835 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 UNC93AQ86WB7 457 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 GUF1Q8N442 669 aaKnown RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 CAMKK1Q8N5S9 505 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 SCAMP5Q8TAC9 235 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 OVCA2Q8WZ82 227 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 CCDC47Q96A33 483 aaKnown RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 GOLPH3LQ9H4A5 285 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 DMAP1Q9NPF5 467 aaPredicted RBP10.32□□□□□ -0.76
VPS41-201ENST00000265745 SMPD4Q9NXE4 827 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 SLC8A2Q9UPR5 921 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 CPQQ9Y646 472 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 TSC2P49815 1807 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 FRYLO94915 3013 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 ANK1P16157 1881 aa10.32□□□□□ -0.76
VPS41-201ENST00000265745 CACNA1AO00555 2505 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 COL4A2P08572 1712 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 FAM92AA1XBS5 289 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 POM121CA8CG34 1229 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 PRR5-ARHGAP8B1AHC4 643 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SLC9A3R1O14745 358 aaPredicted RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 COCHO43405 550 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 LRP3O75074 770 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 BEST1O76090 585 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 CLSTN1O94985 981 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 HLA-DRAP01903 254 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 ZDHHC11BP0C7U3 371 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SDHBP21912 280 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 RPL13P26373 211 aaKnown RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 OPRD1P41143 372 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 ASPAP45381 313 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 PXNP49023 591 aaPredicted RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 NDST1P52848 882 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SLC5A3P53794 718 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 ARHGAP8P85298 464 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 ENPEPQ07075 957 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 PPP3CAQ08209 521 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SPEM2Q0P670 501 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 IFRD2Q12894 506 aaPredicted RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 ADAM9Q13443 819 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SPOPLQ6IQ16 392 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 RHBDF2Q6PJF5 856 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 INTS8Q75QN2 995 aaKnown RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 SYT13Q7L8C5 426 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 DGLUCYQ7Z3D6 616 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 FILIP1Q7Z7B0 1213 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 C12orf29Q8N999 325 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 PDZD8Q8NEN9 1154 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 ZMIZ2Q8NF64 920 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SLC2A14Q8TDB8 520 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 FBXO32Q969P5 355 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 SMARCD1Q96GM5 515 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 CALR3Q96L12 384 aaKnown RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 SMOQ99835 787 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 MED10Q9BTT4 135 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 APOBEC3GQ9HC16 384 aaKnown RBP10.31□□□□□ -0.76
VPS41-201ENST00000265745 CSNK1G1Q9HCP0 422 aa10.31□□□□□ -0.76
VPS41-201ENST00000265745 COMMD8Q9NX08 183 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms