RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 PPFIBP2Q8ND30 876 aa13.55□□□□□ -0.24
SNX1-201ENST00000261889 LPIN3Q9BQK8 851 aa13.55□□□□□ -0.24
SNX1-201ENST00000261889 PDCD2LQ9BRP1 358 aa13.55□□□□□ -0.24
SNX1-201ENST00000261889 CLIC5Q9NZA1 410 aa13.55□□□□□ -0.24
SNX1-201ENST00000261889 STAM2O75886 525 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 SKIP12755 728 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 ADORA2AP29274 412 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 GCNT1Q02742 428 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 CCDC15Q0P6D6 951 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 OGFOD1Q8N543 542 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 TRAPPC12Q8WVT3 735 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 MAIP1Q8WWC4 291 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 CISHQ9NSE2 258 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 SLC4A7Q9Y6M7 1214 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 SYNJ2BP-COX16A0A087WUM0 186 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 TCEA3O75764 348 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 ATXN1P54253 815 aaKnown RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 PDE1BQ01064 536 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 PTAR1Q7Z6K3 402 aaPredicted RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 DEPTORQ8TB45 409 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 CPXM1Q96SM3 734 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 OXCT2Q9BYC2 517 aaPredicted RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.54□□□□□ -0.24
SNX1-201ENST00000261889 KCND2Q9NZV8 630 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 COX16Q9P0S2 106 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 ZNF70Q9UC06 446 aaPredicted RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 IP6K2Q9UHH9 426 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 KCNN4O15554 427 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 POTEJP0CG39 1038 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 GSTT1P30711 240 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 SERPINB6P35237 376 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 SP2Q02086 613 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 GK3PQ14409 553 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 MORF4L2Q15014 288 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 ZC3H12AQ5D1E8 599 aaKnown RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 EFHC2Q5JST6 749 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 CWF19L1Q69YN2 538 aaKnown RBP13.54□□□□□ -0.24
SNX1-201ENST00000261889 RCOR2Q8IZ40 523 aa13.54□□□□□ -0.24
SNX1-201ENST00000261889 ATP8B3O60423 1300 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 MAGEB2O15479 319 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 KRT3P12035 628 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ATP6V1B1P15313 513 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ACADSP16219 412 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 NCF2P19878 526 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 MMP8P22894 467 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 CDH6P55285 790 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ZNF280AP59817 542 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 RSBN1LQ6PCB5 846 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 NDUFAF2Q8N183 169 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ENDOVQ8N8Q3 282 aaKnown RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 BBOF1Q8ND07 529 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 AVENQ9NQS1 362 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 MFHAS1Q9Y4C4 1052 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 PCDHA10Q9Y5I2 948 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 STK24Q9Y6E0 443 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 A0A0B4J269 797 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 CSH1P0DML2 217 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 CSH2P0DML3 217 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 PEX2P28328 305 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 NUMBP49757 651 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ZNF200P98182 395 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 MCL1Q07820 350 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 WASHC2DQ5SRD0 308 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ATG14Q6ZNE5 492 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 SYDE1Q6ZW31 735 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 ULK2Q8IYT8 1036 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 SKA1Q96BD8 255 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 MTBPQ96DY7 904 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 RBM41Q96IZ5 413 aaKnown RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 TWNKQ96RR1 684 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 ZNF184Q99676 751 aaPredicted RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 MOV10L1Q9BXT6 1211 aaKnown RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 NGRNQ9NPE2 291 aaKnown RBP13.53□□□□□ -0.24
SNX1-201ENST00000261889 LRCH1Q9Y2L9 728 aa13.53□□□□□ -0.24
SNX1-201ENST00000261889 RGS20O76081 388 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 LYNP07948 512 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 ANPEPP15144 967 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 SAT1P21673 171 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 PPM1JQ5JR12 505 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 EGFL6Q8IUX8 553 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 PPIL6Q8IXY8 311 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 AGBL3Q8NEM8 1001 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 MZB1Q8WU39 189 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 VCXQ9H320 206 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 ACSS3Q9H6R3 686 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 CYP26B1Q9NR63 512 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 UBIAD1Q9Y5Z9 338 aa13.52□□□□□ -0.24
SNX1-201ENST00000261889 GOLGA8QA0A0J9YX86 632 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 GOLGA8OA6NCC3 632 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 GOLGA8NF8WBI6 632 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 B4GALT5O43286 388 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 NPM3O75607 178 aaKnown RBP13.52□□□□□ -0.25
SNX1-201ENST00000261889 ATP5HO75947 161 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 ZWINTO95229 277 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 ICAM1P05362 532 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 NR3C2P08235 984 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 TCN1P20061 433 aaPredicted RBP13.52□□□□□ -0.25
SNX1-201ENST00000261889 MIPP30301 263 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 CXCL9Q07325 125 aa13.52□□□□□ -0.25
SNX1-201ENST00000261889 DLG1Q12959 904 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms