RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 HES6Q96HZ4 224 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 MFSD14AQ96MC6 490 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 MCEEQ96PE7 176 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 NAP1L3Q99457 506 aaPredicted RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 CAPS2Q9BXY5 557 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 MARCH5Q9NX47 278 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 FAM53CQ9NYF3 392 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 TNFSF13BQ9Y275 285 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 CACNA1HO95180 2353 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 VNN1O95497 513 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 GLUD1P00367 558 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ITGB3P05106 788 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 HSD17B3P37058 310 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SEC24CP53992 1094 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ZACNQ401N2 412 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ANKRD54Q6NXT1 300 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 MPZL3Q6UWV2 235 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 JAMLQ86YT9 394 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SMRP1Q8NCR6 262 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 KHSRPQ92945 711 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 EXOC4Q96A65 974 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 HEXIM2Q96MH2 286 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ZSWIM1Q9BR11 485 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 VN1R3Q9BXE9 311 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 C17orf75Q9HAS0 396 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SAE1Q9UBE0 346 aaPredicted RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 MUTYHQ9UIF7 546 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 RASAL2Q9UJF2 1139 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 NOCTQ9UK39 431 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 PRDM4Q9UKN5 801 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SF3B1O75533 1304 aaKnown RBP eCLIP9.1□□□□□ -0.954e-8■■■■■ 68.9
VPS4B-201ENST00000238497 LRRD1A4D1F6 860 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 GOLGA8MH3BSY2 632 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 PTGESO14684 152 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 TEX28O15482 410 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 DDX3YO15523 660 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ACTN2P35609 894 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 IFNAR2P48551 515 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 RGS7P49802 495 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ZP2Q05996 745 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SMAD2Q15796 467 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 GLE1Q53GS7 698 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 CRELD2Q6UXH1 353 aaPredicted RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ADHFE1Q8IWW8 467 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 CCDC33Q8N5R6 958 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 GSTCDQ8NEC7 633 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ACTRT1Q8TDG2 376 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 TMC2Q8TDI7 906 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ZNF606Q8WXB4 792 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 KLHL5Q96PQ7 755 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 NTPCRQ9BSD7 190 aaKnown RBP9.1□□□□□ -0.95
VPS4B-201ENST00000238497 ZNF148Q9UQR1 794 aa9.1□□□□□ -0.95
VPS4B-201ENST00000238497 SYNJ2BP-COX16A0A087WUM0 186 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 FOXO6A8MYZ6 492 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 CCDC188H7C350 402 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 NDUFAB1O14561 156 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 FSCN2O14926 492 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 P4HA2O15460 535 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 TOM1L1O75674 476 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 LDHAP00338 332 aaKnown RBP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 RARAP10276 462 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 RALAP11233 206 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 BRCC3P46736 316 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 MYBPC2Q14324 1141 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 TTMPQ5BVD1 217 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 RNF187Q5TA31 235 aaPredicted RBP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 SYCE2Q6PIF2 218 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 ERICH1Q86X53 443 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 LRRN4Q8WUT4 740 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 LRRC45Q96CN5 670 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 ANKRD36BP1Q96IX9 119 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 RAB17Q9H0T7 212 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 TMEM134Q9H6X4 195 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 CHST7Q9NS84 486 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 CISHQ9NSE2 258 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 COX16Q9P0S2 106 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 TJP2Q9UDY2 1190 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 CEP83Q9Y592 693 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 SMIM28A0A1B0GU29 152 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 E7EVH7 732 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 PIAS1O75925 651 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 HOXB8P17481 243 aaPredicted RBP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 CLCNKBP51801 687 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 DSC1Q08554 894 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 DNAJC24Q6P3W2 148 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 ELMSAN1Q6PJG2 1045 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 MCOLN2Q8IZK6 566 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 ST13P5Q8NFI4 369 aaPredicted RBP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 KIF12Q96FN5 646 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 MSLNLQ96KJ4 702 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 FBXL18Q96ME1 805 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 PAIP2Q9BPZ3 127 aaKnown RBP9.09□□□□□ -0.95
VPS4B-201ENST00000238497 ISCUQ9H1K1 167 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 KIAA1586Q9HCI6 787 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 MAN1C1Q9NR34 630 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 RAPGEFL1Q9UHV5 662 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 AGAP1Q9UPQ3 857 aa9.09□□□□□ -0.95
VPS4B-201ENST00000238497 A0A0B4J269 797 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 F8VP50 259 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms