RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Schip1P0DPB4 484 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hspa4lP48722 838 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Patl1Q3TC46 770 aaKnown RBP16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tas2r109Q7M707 316 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Entpd3Q8BFW6 529 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sppl3Q9CUS9 384 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm16430A6X8J1 155 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ass1P16460 412 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PolgP54099 1218 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ripk2P58801 539 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 ZbbxQ0P5X5 716 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Garnl3Q3V0G7 1038 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Acap2Q6ZQK5 770 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ldlrap1Q8C142 308 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Fubp1Q91WJ8 651 aaKnown RBP16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cdk9Q99J95 372 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Me2Q99KE1 589 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Snx2Q9CWK8 519 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Eef1akmt2Q9D853 244 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm4985A2ALC6 410 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zfp358E9Q8M1 571 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 AmhP27106 555 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Olfr212Q7TS33 327 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zswim6Q80TB7 1207 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cdkn2aipQ8BI72 563 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pi4kbQ8BKC8 816 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hsdl1Q8BTX9 330 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dnali1Q8BVN8 258 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hdac11Q91WA3 347 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Rilpl2Q99LE1 197 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 SerhlQ9EPB5 311 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ddx39bQ9Z1N5 428 aaKnown RBP16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ssxb9A2BI93 185 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gpd2Q64521 727 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ugt3a2Q8JZZ0 523 aa16.1■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 B020011L13RikA0A087WQI7 412 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Acot1O55137 419 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Krt4P07744 525 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 LmnaP48678 665 aaKnown RBP16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Nr2c2P49117 596 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ppm1jQ149T7 507 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Phc1Q64028 1012 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pwp2Q8BU03 919 aaKnown RBP16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ppme1Q8BVQ5 386 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Colgalt1Q8K297 617 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dnajc28Q8VCE1 385 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PudpQ9D5U5 234 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tjap1Q9DCD5 539 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Spin2fJ3QPU0 254 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Casp4P70343 373 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cul4aQ3TCH7 759 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 FAM120AQ6A0A9 1112 aaKnown RBP16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Catsper3Q80W99 395 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Rev1Q920Q2 1249 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Uts2Q9QZQ3 123 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm36028A0A0U1RPM1 299 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 B3gat3P58158 335 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pick1Q62083 416 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 HltfQ6PCN7 1003 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cpa1Q7TPZ8 419 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pan2Q8BGF7 1200 aaKnown RBP16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PpatQ8CIH9 517 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mcoln2Q8K595 566 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Olfr1502Q8VG66 316 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Trmt11Q9CWH5 460 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Klrc2Q9WTJ9 238 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 TprnA2AI08 749 aaKnown RBP16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gbp4A4UUI3 631 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Slc16a6B1AT66 607 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cbx2P30658 519 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Slc1a2P43006 572 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Serpina5P70458 405 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gas1Q01721 343 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Trmt1Q3TX08 663 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Nr2e1Q64104 385 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Senp5Q6NXL6 749 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Naif1Q6PFD7 327 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Alkbh8Q80Y20 664 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ddhd1Q80YA3 547 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pnma2Q8BHK0 365 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Slc9a9Q8BZ00 644 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Q8CD60 292 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Snrnp27Q8K194 155 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Snx5Q9D8U8 404 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tmem59Q9QY73 323 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Nfu1Q9QZ23 255 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Chek2Q9Z265 546 aa16.09■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pcdh9F8VPK8 1237 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 AlpiF8VPQ6 554 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Rpl7aP12970 266 aaKnown RBP16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm7247Q6UY52 187 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 ArhgdiaQ99PT1 204 aaKnown RBP16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Terb2Q9D494 218 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Prl2b1Q9DAZ2 228 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 DmgdhQ9DBT9 869 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PygmQ9WUB3 842 aaKnown RBP16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mzf1S4R1L6 814 aa16.08■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sec14l1A8Y5H7 715 aa16.08■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Akr1b7P21300 316 aa16.08■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Yy1Q00899 414 aa16.08■□□□□ 0.16
Retrieved 100 of 22,080 RNA–protein pairs in 30.8 ms