RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Lca5lQ8C0X0 741 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Trip10Q8CJ53 603 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Stx18Q8VDS8 334 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 YarsQ91WQ3 528 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Mov10l1Q99MV5 1187 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Ccdc22Q9JIG7 627 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Psmg1Q9JK23 289 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Chrac1Q9JKP8 129 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Hs6st3Q9QYK4 470 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Trpc2Q9R244 1172 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Gm3371F7CQW8 167 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Gm3424L7N298 263 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Gm8246M0QWX9 263 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Mtco1P00397 514 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Cbx2P30658 519 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Eif3eP60229 445 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Crnkl1P63154 690 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Arhgap45Q3TBD2 1116 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Mphosph8Q3TYA6 858 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Fam198aQ3UY90 562 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Ttc9Q3V038 219 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 FcgrtQ61559 365 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Trim24Q64127 1051 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Rps6kc1Q8BLK9 1056 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Uba3Q8C878 462 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Polr2bQ8CFI7 1174 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Olfr397Q8VEZ6 315 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Olfr449Q8VGW8 311 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Kdelr1Q99JH8 212 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Slc13a1Q9JHI4 594 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Kcng2F7A6P6 480 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Morc3F7BJB9 942 aaKnown RBP17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Olfr67F8VPJ8 320 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Gm3415J3QMS8 315 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Vav1P27870 845 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Shmt1P50431 478 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 PhbP67778 272 aaKnown RBP17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Ugt1a1Q63886 535 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Fam185aQ7TPD2 378 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Gabbr2Q80T41 940 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Gpc3Q8CFZ4 579 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Pdik1lQ8QZR7 341 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Znf426Q8R1D1 550 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Nudt8Q9CR24 210 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Gm3404Q9D506 307 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Kcnd2Q9Z0V2 630 aa17.08■□□□□ 0.33
Shh-201ENSMUST00000002708 Nr2c2P49117 596 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Stmn1P54227 149 aaKnown RBP17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Elf3Q3UPW2 391 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 PighQ5M9N4 188 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Arhgap20Q6IFT4 1182 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 IqceQ6PCQ0 778 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Ints6lQ8BND4 861 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Tmem74Q8BQU7 305 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 UvragQ8K245 698 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Trim60Q8VI40 466 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Rabep2Q91WG2 554 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Txndc12Q9CQU0 170 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Fam212aQ9CX62 282 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Nt5c3aQ9D020 331 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 MceeQ9D1I5 178 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Ubxn11Q9D572 484 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Tbx20Q9ES03 445 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Piwil1Q9JMB7 862 aa17.08■□□□□ 0.32
Shh-201ENSMUST00000002708 Gm29133A0A1B0GT72 266 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Hsd17b14E9Q3D4 273 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Dnase1l3O55070 310 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Ccr1P51675 355 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Tfdp1Q08639 410 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Sult1d1Q3UZZ6 295 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Samhd1Q60710 627 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 N4bp1Q6A037 893 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Q8BZE1 841 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 SncaipQ99ME3 962 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Med7Q9CZB6 233 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Tssk3Q9D2E1 268 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Mrps9Q9D7N3 390 aaKnown RBP17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Mrpl4Q9DCU6 294 aaKnown RBP17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Scyl1Q9EQC5 806 aaKnown RBP17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Mbd1Q9Z2E2 636 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 C130060K24RikG3UWA8 416 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 AlplP09242 524 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Gsta4P24472 222 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Ccnd3P30282 292 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Gata5P97489 404 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Mark2Q05512 776 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Acap2Q6ZQK5 770 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Olfr392Q7TRX6 312 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Znf598Q80YR4 908 aaKnown RBP17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Tdp1Q8BJ37 609 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Usp1Q8BJQ2 784 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Kctd15Q8K0E1 283 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Vmn2r25W4VSP2 855 aa17.07■□□□□ 0.32
Shh-201ENSMUST00000002708 Apold1E9Q0X2 246 aa17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Gm17535J3KMR8 224 aa17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Ptpn11P35235 597 aa17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Mxi1P50540 228 aa17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Lhx5P61375 402 aa17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Cyth2P63034 400 aaKnown RBP17.06■□□□□ 0.32
Shh-201ENSMUST00000002708 Stx2Q00262 289 aa17.06■□□□□ 0.32
Retrieved 100 of 22,080 RNA–protein pairs in 46.9 ms