RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C YMR320WQ04897 101 aa1.87□□□□□ -2.11
DNL4YOR005C YLR361C-AQ3E795 98 aa1.87□□□□□ -2.11
DNL4YOR005C YMR105W-AQ8TGS8 64 aa1.87□□□□□ -2.11
DNL4YOR005C YJL027CP47063 138 aaPredicted RBP1.86□□□□□ -2.11
DNL4YOR005C YDR114CQ04597 100 aa1.86□□□□□ -2.11
DNL4YOR005C YOL014WQ08110 124 aa1.86□□□□□ -2.11
DNL4YOR005C YLR412C-AQ3E742 68 aa1.86□□□□□ -2.11
DNL4YOR005C ENV10Q99382 181 aa1.86□□□□□ -2.11
DNL4YOR005C BLM10P43583 2143 aa1.86□□□□□ -2.11
DNL4YOR005C YFL051CP43552 160 aa1.86□□□□□ -2.11
DNL4YOR005C YFL019CP43576 117 aa1.86□□□□□ -2.11
DNL4YOR005C YML100W-AQ8TGT0 57 aa1.86□□□□□ -2.11
DNL4YOR005C YHR032W-AP0C5N6 59 aa1.85□□□□□ -2.11
DNL4YOR005C YKR045CP36138 183 aa1.85□□□□□ -2.11
DNL4YOR005C YGR219WP53307 113 aa1.85□□□□□ -2.11
DNL4YOR005C YDL022C-AP0C5L6 82 aa1.85□□□□□ -2.11
DNL4YOR005C UGX2P32772 223 aa1.85□□□□□ -2.11
DNL4YOR005C VMA11P32842 164 aa1.85□□□□□ -2.11
DNL4YOR005C YHL042WP38729 150 aa1.85□□□□□ -2.11
DNL4YOR005C POR2P40478 281 aa1.85□□□□□ -2.11
DNL4YOR005C IRC23Q08416 157 aa1.85□□□□□ -2.11
DNL4YOR005C YDR119W-AQ2V2P9 66 aa1.85□□□□□ -2.11
DNL4YOR005C SEC16P48415 2195 aaKnown RBP1.85□□□□□ -2.11
DNL4YOR005C POL2P21951 2222 aaKnown RBP1.85□□□□□ -2.11
DNL4YOR005C RPL39P04650 51 aa1.85□□□□□ -2.11
DNL4YOR005C MRPL38P35996 138 aaPredicted RBP1.85□□□□□ -2.11
DNL4YOR005C MID2P36027 376 aa1.85□□□□□ -2.11
DNL4YOR005C VTC1P40046 129 aaRIP-Chip data1.85□□□□□ -2.11not detected
DNL4YOR005C YGR039WP53225 103 aa1.85□□□□□ -2.11
DNL4YOR005C COF1Q03048 143 aaKnown RBP1.85□□□□□ -2.11
DNL4YOR005C ECM12O13529 151 aa1.84□□□□□ -2.11
DNL4YOR005C QCR8P08525 94 aa1.84□□□□□ -2.11
DNL4YOR005C PHO85P17157 305 aa1.84□□□□□ -2.11
DNL4YOR005C TOM6P33448 61 aa1.84□□□□□ -2.11
DNL4YOR005C DSE2P38844 325 aa1.84□□□□□ -2.11
DNL4YOR005C YIL059CP40520 121 aa1.84□□□□□ -2.11
DNL4YOR005C CWP2P43497 92 aa1.84□□□□□ -2.11
DNL4YOR005C DCV1P43595 202 aa1.84□□□□□ -2.11
DNL4YOR005C YDR381C-AQ3E6R5 114 aa1.84□□□□□ -2.11
DNL4YOR005C TOM1Q03280 3268 aa1.84□□□□□ -2.11
DNL4YOR005C YAR023CD6VPM8 179 aa1.84□□□□□ -2.12
DNL4YOR005C NRG2P38082 220 aa1.84□□□□□ -2.12
DNL4YOR005C YJR146WP47174 117 aa1.84□□□□□ -2.12
DNL4YOR005C MRPS12P53732 153 aa1.84□□□□□ -2.12
DNL4YOR005C YDR274CP87283 123 aa1.84□□□□□ -2.12
DNL4YOR005C BRR2P32639 2163 aaKnown RBP1.83□□□□□ -2.12
DNL4YOR005C YHL037CP38733 133 aa1.83□□□□□ -2.12
DNL4YOR005C AIM19P40502 157 aa1.83□□□□□ -2.12
DNL4YOR005C CCW12Q12127 133 aa1.83□□□□□ -2.12
DNL4YOR005C YPL038W-AQ3E7B4 63 aa1.83□□□□□ -2.12
DNL4YOR005C ACC1Q00955 2233 aaKnown RBP1.83□□□□□ -2.12
DNL4YOR005C SHU1P38751 150 aa1.83□□□□□ -2.12
DNL4YOR005C MPC2P38857 129 aa1.83□□□□□ -2.12
DNL4YOR005C VPS55P47111 140 aa1.83□□□□□ -2.12
DNL4YOR005C EMC6Q12431 108 aa1.83□□□□□ -2.12
DNL4YOR005C YBR200W-AQ3E755 54 aa1.83□□□□□ -2.12
DNL4YOR005C HUR1P45820 110 aa1.82□□□□□ -2.12
DNL4YOR005C SED1Q01589 338 aa1.82□□□□□ -2.12
DNL4YOR005C UBC5P15732 148 aa1.82□□□□□ -2.12
DNL4YOR005C YHR022CP38763 256 aa1.82□□□□□ -2.12
DNL4YOR005C YDR029WQ12111 104 aa1.82□□□□□ -2.12
DNL4YOR005C PRM7Q12459 698 aa1.82□□□□□ -2.12
DNL4YOR005C YAR029WP39549 74 aa1.81□□□□□ -2.12
DNL4YOR005C YSY6P38374 65 aa1.81□□□□□ -2.12
DNL4YOR005C SVP26P38869 228 aa1.81□□□□□ -2.12
DNL4YOR005C MPC3P53311 146 aa1.81□□□□□ -2.12
DNL4YOR005C FYV12Q08559 129 aa1.81□□□□□ -2.12
DNL4YOR005C YNL146C-AQ3E7Z1 64 aa1.81□□□□□ -2.12
DNL4YOR005C BEM2P39960 2167 aaKnown RBP1.81□□□□□ -2.12
DNL4YOR005C YER039C-AP0CD97 72 aa1.81□□□□□ -2.12
DNL4YOR005C KNH1P50112 268 aa1.81□□□□□ -2.12
DNL4YOR005C SBH1P52870 82 aa1.81□□□□□ -2.12
DNL4YOR005C YNL190WP53872 204 aa1.81□□□□□ -2.12
DNL4YOR005C KTI11Q3E840 82 aa1.81□□□□□ -2.12
DNL4YOR005C RGM1Q00453 211 aa1.8□□□□□ -2.12
DNL4YOR005C ATP20Q12233 115 aa1.8□□□□□ -2.12
DNL4YOR005C SEN1Q00416 2231 aaKnown RBP1.8□□□□□ -2.12
DNL4YOR005C MRPS8Q03799 155 aa1.8□□□□□ -2.12
DNL4YOR005C RPL26AP05743 127 aaKnown RBP1.79□□□□□ -2.12
DNL4YOR005C RPL26BP53221 127 aaKnown RBP1.79□□□□□ -2.12
DNL4YOR005C YLR042CQ07990 161 aa1.79□□□□□ -2.12
DNL4YOR005C YCL048W-AQ2V2Q2 79 aa1.79□□□□□ -2.12
DNL4YOR005C YLR236CA0A023PZG4 107 aa1.79□□□□□ -2.12
DNL4YOR005C YHL018WP38744 120 aaPredicted RBP1.79□□□□□ -2.12
DNL4YOR005C YEL008WP40001 126 aa1.79□□□□□ -2.12
DNL4YOR005C YCR050CP25630 102 aa1.78□□□□□ -2.12
DNL4YOR005C PMP3P87284 55 aa1.78□□□□□ -2.12
DNL4YOR005C IRC21Q04772 201 aa1.78□□□□□ -2.12
DNL4YOR005C DYN1P36022 4092 aa1.78□□□□□ -2.12
DNL4YOR005C YJR107C-AP0CT86 78 aa1.78□□□□□ -2.12
DNL4YOR005C YRA2P36036 203 aaKnown RBP RIP-Chip data1.78□□□□□ -2.12not detected
DNL4YOR005C YBR209WP38311 105 aa1.77□□□□□ -2.13
DNL4YOR005C YER187WP40102 141 aa1.77□□□□□ -2.13
DNL4YOR005C YGR164WP53291 111 aa1.77□□□□□ -2.13
DNL4YOR005C YMR295CQ03559 197 aa1.77□□□□□ -2.13
DNL4YOR005C YER135CP40082 130 aa1.77□□□□□ -2.13
DNL4YOR005C RPL33BP41056 107 aaKnown RBP1.77□□□□□ -2.13
DNL4YOR005C YGR025WP53216 100 aa1.77□□□□□ -2.13
DNL4YOR005C RSM19P53733 91 aaPredicted RBP1.77□□□□□ -2.13
DNL4YOR005C YOR011W-AQ3E807 68 aa1.77□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 29.3 ms