RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeastyeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN1YHR027C YGR035W-AQ45U48 73 aa2.4□□□□□ -2.03
RPN1YHR027C YML100W-AQ8TGT0 57 aa2.4□□□□□ -2.03
RPN1YHR027C ATP15P21306 62 aa2.4□□□□□ -2.03
RPN1YHR027C MDM35O60200 86 aa2.39□□□□□ -2.03
RPN1YHR027C TVP23P38962 199 aa2.39□□□□□ -2.03
RPN1YHR027C SPG4Q04438 115 aa2.39□□□□□ -2.03
RPN1YHR027C HSP150P32478 413 aa2.39□□□□□ -2.03
RPN1YHR027C KRE9P39005 276 aa2.39□□□□□ -2.03
RPN1YHR027C IRC21Q04772 201 aa2.39□□□□□ -2.03
RPN1YHR027C YOL160WQ08321 113 aa2.39□□□□□ -2.03
RPN1YHR027C TSC3Q3E790 80 aa2.39□□□□□ -2.03
RPN1YHR027C BLM10P43583 2143 aa2.39□□□□□ -2.03
RPN1YHR027C YDR182W-AQ3E796 67 aa2.38□□□□□ -2.03
RPN1YHR027C YBL071CP38185 102 aa2.38□□□□□ -2.03
RPN1YHR027C ARC15P40518 154 aaRIP-Chip data2.38□□□□□ -2.03not detected
RPN1YHR027C URM1P40554 99 aaPredicted RBP2.38□□□□□ -2.03
RPN1YHR027C RPL26BP53221 127 aaKnown RBP2.38□□□□□ -2.03
RPN1YHR027C CRC1Q12289 327 aa2.38□□□□□ -2.03
RPN1YHR027C YOR008C-AQ3E7B9 74 aa2.38□□□□□ -2.03
RPN1YHR027C YOL166W-AQ8TGJ1 51 aa2.38□□□□□ -2.03
RPN1YHR027C YAL064W-BO13512 126 aa2.37□□□□□ -2.03
RPN1YHR027C RPL36BO14455 100 aaKnown RBP2.37□□□□□ -2.03
RPN1YHR027C RPL36AP05745 100 aaPredicted RBP2.37□□□□□ -2.03
RPN1YHR027C NOP10Q6Q547 58 aaPredicted RBP2.37□□□□□ -2.03
RPN1YHR027C YJR146WP47174 117 aa2.37□□□□□ -2.03
RPN1YHR027C SED1Q01589 338 aa2.37□□□□□ -2.03
RPN1YHR027C YER188C-AP0C0V2 99 aa2.37□□□□□ -2.03
RPN1YHR027C ARF1P11076 181 aaKnown RBP2.37□□□□□ -2.03
RPN1YHR027C MPC3P53311 146 aa2.37□□□□□ -2.03
RPN1YHR027C YKL065W-AQ2V2P2 73 aa2.37□□□□□ -2.03
RPN1YHR027C YLR236CA0A023PZG4 107 aa2.36□□□□□ -2.03
RPN1YHR027C REE1P40893 198 aa2.36□□□□□ -2.03
RPN1YHR027C RPL15AP05748 204 aaKnown RBP2.36□□□□□ -2.03
RPN1YHR027C YMR122CQ03879 124 aa2.36□□□□□ -2.03
RPN1YHR027C YJL027CP47063 138 aaPredicted RBP2.35□□□□□ -2.03
RPN1YHR027C RGM1Q00453 211 aa2.35□□□□□ -2.03
RPN1YHR027C YSF3P0C074 85 aaPredicted RBP2.35□□□□□ -2.03
RPN1YHR027C YJR107C-AP0CT86 78 aa2.35□□□□□ -2.03
RPN1YHR027C RPB10P22139 70 aa2.35□□□□□ -2.03
RPN1YHR027C TDA2P40045 126 aa2.35□□□□□ -2.03
RPN1YHR027C YOR034C-AQ3E735 80 aa2.35□□□□□ -2.03
RPN1YHR027C GLT1Q12680 2145 aaKnown RBP2.35□□□□□ -2.03
RPN1YHR027C OST5Q92316 86 aa2.34□□□□□ -2.03
RPN1YHR027C YAL064WP39711 94 aa2.34□□□□□ -2.03
RPN1YHR027C SPG1P50088 95 aa2.34□□□□□ -2.03
RPN1YHR027C YHL037CP38733 133 aa2.34□□□□□ -2.04
RPN1YHR027C ATP18P81450 59 aa2.34□□□□□ -2.04
RPN1YHR027C YPR153WQ06537 140 aa2.34□□□□□ -2.04
RPN1YHR027C FYV5P25585 152 aa2.33□□□□□ -2.04
RPN1YHR027C SEC16P48415 2195 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C QCR8P08525 94 aa2.33□□□□□ -2.04
RPN1YHR027C RPS23AP0CX29 145 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C RPS23BP0CX30 145 aa2.33□□□□□ -2.04
RPN1YHR027C RPS30AP0CX33 63 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C RPS30BP0CX34 63 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C RPS27AP35997 82 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C RPS27BP38711 82 aa2.33□□□□□ -2.04
RPN1YHR027C YOR020W-AQ3E824 90 aa2.33□□□□□ -2.04
RPN1YHR027C BEM2P39960 2167 aaKnown RBP2.33□□□□□ -2.04
RPN1YHR027C RNH203Q12338 110 aa2.32□□□□□ -2.04
RPN1YHR027C FAS1P07149 2051 aaKnown RBP2.31□□□□□ -2.04
RPN1YHR027C RRT1P38192 103 aa2.31□□□□□ -2.04
RPN1YHR027C UTH1P36135 365 aa2.31□□□□□ -2.04
RPN1YHR027C YIR020CP40575 100 aa2.31□□□□□ -2.04
RPN1YHR027C ACC1Q00955 2233 aaKnown RBP2.31□□□□□ -2.04
RPN1YHR027C YFR009W-AP0C5M9 85 aa2.31□□□□□ -2.04
RPN1YHR027C YER135CP40082 130 aa2.31□□□□□ -2.04
RPN1YHR027C YGL088WP53151 121 aa2.31□□□□□ -2.04
RPN1YHR027C DDR48P18899 430 aaKnown RBP2.3□□□□□ -2.04
RPN1YHR027C YKR073CP36153 106 aa2.3□□□□□ -2.04
RPN1YHR027C YPS5P53057 165 aa2.3□□□□□ -2.04
RPN1YHR027C YMR244WQ04018 355 aa2.3□□□□□ -2.04
RPN1YHR027C YDR114CQ04597 100 aa2.3□□□□□ -2.04
RPN1YHR027C RPR2P40571 144 aa2.3□□□□□ -2.04
RPN1YHR027C YBR200W-AQ3E755 54 aa2.3□□□□□ -2.04
RPN1YHR027C YEL008WP40001 126 aa2.29□□□□□ -2.04
RPN1YHR027C BRR2P32639 2163 aaKnown RBP2.29□□□□□ -2.04
RPN1YHR027C RPL38P49167 78 aaKnown RBP2.29□□□□□ -2.04
RPN1YHR027C YER145C-AA0A023PYF4 145 aa2.28□□□□□ -2.04
RPN1YHR027C YOR032W-AQ8TGS1 66 aa2.28□□□□□ -2.04
RPN1YHR027C YGR025WP53216 100 aa2.28□□□□□ -2.04
RPN1YHR027C YGR045CP53229 120 aa2.28□□□□□ -2.04
RPN1YHR027C SEN1Q00416 2231 aaKnown RBP2.28□□□□□ -2.04
RPN1YHR027C YCR043CP25361 127 aa2.28□□□□□ -2.05
RPN1YHR027C HOT13P36078 116 aa2.28□□□□□ -2.05
RPN1YHR027C YOL014WQ08110 124 aa2.27□□□□□ -2.05
RPN1YHR027C YIL156W-BQ2V2P4 73 aa2.27□□□□□ -2.05
RPN1YHR027C YLL006W-AQ3E814 58 aa2.27□□□□□ -2.05
RPN1YHR027C YOL085CQ99345 113 aa2.27□□□□□ -2.05
RPN1YHR027C QCR10P37299 77 aa2.27□□□□□ -2.05
RPN1YHR027C YIL046W-AQ3E7Z4 54 aa2.27□□□□□ -2.05
RPN1YHR027C RPS11AP0CX47 156 aaKnown RBP2.26□□□□□ -2.05
RPN1YHR027C RPS11BP0CX48 156 aaKnown RBP2.26□□□□□ -2.05
RPN1YHR027C FPR1P20081 114 aaKnown RBP2.26□□□□□ -2.05
RPN1YHR027C COX14P39103 70 aa2.26□□□□□ -2.05
RPN1YHR027C MRPL39P36533 70 aa2.26□□□□□ -2.05
RPN1YHR027C SIP18P50263 79 aa2.26□□□□□ -2.05
RPN1YHR027C YMR105W-AQ8TGS8 64 aa2.26□□□□□ -2.05
RPN1YHR027C POL2P21951 2222 aaKnown RBP2.25□□□□□ -2.05
RPN1YHR027C YER084WP40057 128 aa2.25□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 59 ms