RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W RPL38P49167 78 aaKnown RBP-0.24□□□□□ -2.45
PRP42YDR235W YNL042W-BQ3E7Z2 85 aa-0.24□□□□□ -2.45
PRP42YDR235W STT4P37297 1900 aa-0.24□□□□□ -2.45
PRP42YDR235W TY1B-JR1P47098 1755 aa-0.25□□□□□ -2.45
PRP42YDR235W TY1B-ML2Q03434 1755 aaKnown RBP-0.25□□□□□ -2.45
PRP42YDR235W TY1B-ER1Q03612 1755 aa-0.25□□□□□ -2.45
PRP42YDR235W TY1B-OLQ12273 1755 aa-0.25□□□□□ -2.45
PRP42YDR235W ECM12O13529 151 aa-0.25□□□□□ -2.45
PRP42YDR235W YBR292CP38357 123 aa-0.25□□□□□ -2.45
PRP42YDR235W GNA1P43577 159 aaPredicted RBP-0.25□□□□□ -2.45
PRP42YDR235W COX12Q01519 83 aa-0.25□□□□□ -2.45
PRP42YDR235W MIX14Q04341 121 aa-0.25□□□□□ -2.45
PRP42YDR235W YOR289WQ12012 251 aaPredicted RBP-0.25□□□□□ -2.45
PRP42YDR235W YDR246W-AQ3E763 66 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-LR1P0C2J3 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-FP0CX63 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-GR2P0CX64 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-CP25384 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-DR2Q03494 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-DR3Q07791 1770 aaKnown RBP-0.25□□□□□ -2.45
PRP42YDR235W TY2B-OR1Q12113 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-DR1Q12472 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-BQ12491 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W TY2B-OR2Q12501 1770 aa-0.25□□□□□ -2.45
PRP42YDR235W BPT1P14772 1559 aa-0.25□□□□□ -2.45
PRP42YDR235W RPA190P10964 1664 aaKnown RBP-0.26□□□□□ -2.45
PRP42YDR235W COX7P10174 60 aa-0.26□□□□□ -2.45
PRP42YDR235W VMA21P41806 77 aa-0.26□□□□□ -2.45
PRP42YDR235W YMR122W-AQ3E842 84 aa-0.26□□□□□ -2.45
PRP42YDR235W POL1P13382 1468 aa-0.26□□□□□ -2.45
PRP42YDR235W TY3B-IQ7LHG5 1498 aaKnown RBP-0.26□□□□□ -2.45
PRP42YDR235W YHR214C-DP0CX93 97 aa-0.27□□□□□ -2.45
PRP42YDR235W UBC4P15731 148 aa-0.27□□□□□ -2.45
PRP42YDR235W YBL044WP38194 122 aa-0.27□□□□□ -2.45
PRP42YDR235W SPP41P38904 1435 aa-0.27□□□□□ -2.45
PRP42YDR235W EMC5P40540 141 aa-0.27□□□□□ -2.45
PRP42YDR235W PDR11P40550 1411 aa-0.27□□□□□ -2.45
PRP42YDR235W YMR103CQ04436 120 aa-0.27□□□□□ -2.45
PRP42YDR235W SPC2Q04969 178 aa-0.27□□□□□ -2.45
PRP42YDR235W SDH6Q3E785 79 aa-0.27□□□□□ -2.45
PRP42YDR235W UTP10P42945 1769 aaKnown RBP-0.27□□□□□ -2.45
PRP42YDR235W YOR304C-AO14468 76 aa-0.27□□□□□ -2.45
PRP42YDR235W HMRA1P0CY11 126 aa-0.27□□□□□ -2.45
PRP42YDR235W UBC5P15732 148 aa-0.27□□□□□ -2.45
PRP42YDR235W NHP2P32495 156 aaPredicted RBP-0.27□□□□□ -2.45
PRP42YDR235W PDX3P38075 228 aaKnown RBP-0.27□□□□□ -2.45
PRP42YDR235W RGI1P40043 161 aaPredicted RBP-0.27□□□□□ -2.45
PRP42YDR235W YER137CP40083 148 aaKnown RBP-0.27□□□□□ -2.45
PRP42YDR235W AIM19P40502 157 aa-0.27□□□□□ -2.45
PRP42YDR235W ATP18P81450 59 aa-0.27□□□□□ -2.45
PRP42YDR235W PAU23Q07987 124 aa-0.27□□□□□ -2.45
PRP42YDR235W PAU17Q12370 124 aa-0.27□□□□□ -2.45
PRP42YDR235W SPO14P36126 1683 aa-0.27□□□□□ -2.45
PRP42YDR235W FPR2P32472 135 aa-0.28□□□□□ -2.45
PRP42YDR235W TOM6P33448 61 aa-0.28□□□□□ -2.45
PRP42YDR235W BSC4P53841 131 aa-0.28□□□□□ -2.45
PRP42YDR235W YOS1Q3E834 85 aa-0.28□□□□□ -2.45
PRP42YDR235W KSH1Q8TGJ3 72 aa-0.28□□□□□ -2.45
PRP42YDR235W YAL065CO13511 128 aa-0.29□□□□□ -2.46
PRP42YDR235W YMR090WQ04304 227 aaKnown RBP-0.29□□□□□ -2.46
PRP42YDR235W FYV7Q12247 151 aa-0.29□□□□□ -2.46
PRP42YDR235W YIL156W-BQ2V2P4 73 aa-0.29□□□□□ -2.46
PRP42YDR235W YPR108W-AQ3E7B3 70 aa-0.29□□□□□ -2.46
PRP42YDR235W TOR1P35169 2470 aa-0.29□□□□□ -2.46
PRP42YDR235W XRN1P22147 1528 aaKnown RBP-0.3□□□□□ -2.46
PRP42YDR235W YCR085WP25650 117 aa-0.3□□□□□ -2.46
PRP42YDR235W YBR090CP38253 122 aa-0.3□□□□□ -2.46
PRP42YDR235W NOP10Q6Q547 58 aaPredicted RBP-0.3□□□□□ -2.46
PRP42YDR235W MOT1P32333 1867 aa-0.3□□□□□ -2.46
PRP42YDR235W MMS1Q06211 1407 aa-0.3□□□□□ -2.46
PRP42YDR235W SNU13P39990 126 aaKnown RBP-0.31□□□□□ -2.46
PRP42YDR235W MSL1P40567 111 aaPredicted RBP-0.31□□□□□ -2.46
PRP42YDR235W SWC7Q06707 132 aa-0.31□□□□□ -2.46
PRP42YDR235W YMR001C-AQ8TGS9 76 aa-0.31□□□□□ -2.46
PRP42YDR235W DYN1P36022 4092 aa-0.31□□□□□ -2.46
PRP42YDR235W SIN3P22579 1536 aa-0.31□□□□□ -2.46
PRP42YDR235W SWR1Q05471 1514 aa-0.31□□□□□ -2.46
PRP42YDR235W GDB1Q06625 1536 aa-0.31□□□□□ -2.46
PRP42YDR235W YHL005CP38752 130 aa-0.31□□□□□ -2.46
PRP42YDR235W RPS12P48589 143 aaKnown RBP-0.31□□□□□ -2.46
PRP42YDR235W YGR025WP53216 100 aa-0.31□□□□□ -2.46
PRP42YDR235W REV3P14284 1504 aa-0.31□□□□□ -2.46
PRP42YDR235W VTH1P40438 1549 aa-0.31□□□□□ -2.46
PRP42YDR235W VTH2P40890 1549 aa-0.31□□□□□ -2.46
PRP42YDR235W TSC11P40061 1430 aa-0.32□□□□□ -2.46
PRP42YDR235W YDL022C-AP0C5L6 82 aa-0.32□□□□□ -2.46
PRP42YDR235W RPS29AP41057 56 aaKnown RBP-0.32□□□□□ -2.46
PRP42YDR235W SIP18P50263 79 aa-0.32□□□□□ -2.46
PRP42YDR235W YDR029WQ12111 104 aa-0.32□□□□□ -2.46
PRP42YDR235W MHF2Q3E829 80 aa-0.32□□□□□ -2.46
PRP42YDR235W GEA1P47102 1408 aaPredicted RBP-0.32□□□□□ -2.46
PRP42YDR235W PDR10P51533 1564 aa-0.32□□□□□ -2.46
PRP42YDR235W TY1B-NL2Q99337 1749 aaKnown RBP-0.32□□□□□ -2.46
PRP42YDR235W RPS27AP35997 82 aaKnown RBP-0.33□□□□□ -2.46
PRP42YDR235W YDR042CQ03205 200 aa-0.33□□□□□ -2.46
PRP42YDR235W SCP1Q08873 200 aa-0.33□□□□□ -2.46
PRP42YDR235W YPR145C-AQ2V2P0 78 aa-0.33□□□□□ -2.46
PRP42YDR235W YDR182W-AQ3E796 67 aa-0.33□□□□□ -2.46
PRP42YDR235W IRC20Q06554 1556 aa-0.33□□□□□ -2.46
PRP42YDR235W MDN1Q12019 4910 aaKnown RBP-0.33□□□□□ -2.46
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms