RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RSPRY1Q96DX4 576 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 DPCDQ9BVM2 203 aaPredicted RBP5.19□□□□□ -1.58
CD44-239ENST00000639002 CIPCQ9C0C6 399 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 ZIM2Q9NZV7 527 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 WDR17Q8IZU2 1322 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 PHGDHO43175 533 aaKnown RBP5.18□□□□□ -1.58
CD44-239ENST00000639002 TBC1D4O60343 1298 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 FGAP02671 866 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 PTGER1P34995 402 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 ANAPC15P60006 121 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 MAEAQ7L5Y9 396 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 KIAA0319LQ8IZA0 1049 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 MPP5Q8N3R9 675 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 DENND1AQ8TEH3 1009 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 FCRL4Q96PJ5 515 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 C22orf23Q9BZE7 217 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 XPNPEP3Q9NQH7 507 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 TRMT13Q9NUP7 481 aaKnown RBP5.18□□□□□ -1.58
CD44-239ENST00000639002 STK32BQ9NY57 414 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 KLHL13Q9P2N7 655 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 LPAR3Q9UBY5 353 aa5.18□□□□□ -1.58
CD44-239ENST00000639002 FCHO1O14526 889 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 PPEF2O14830 753 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 PMPCBO75439 489 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 MYCLP12524 364 aaPredicted RBP5.17□□□□□ -1.58
CD44-239ENST00000639002 GKP32189 559 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 PRKAG1P54619 331 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 EPHB1P54762 984 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 SATB1Q01826 763 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 KCTD20Q7Z5Y7 419 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 FAM177A1Q8N128 213 aaPredicted RBP5.17□□□□□ -1.58
CD44-239ENST00000639002 DNMT3BQ9UBC3 853 aaKnown RBP5.17□□□□□ -1.58
CD44-239ENST00000639002 CPNE7Q9UBL6 633 aa5.17□□□□□ -1.58
CD44-239ENST00000639002 SCAF8Q9UPN6 1271 aaKnown RBP5.17□□□□□ -1.58
CD44-239ENST00000639002 A6NNZ2 444 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 PROB1E7EW31 1015 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 CTNND1O60716 968 aaKnown RBP5.16□□□□□ -1.58
CD44-239ENST00000639002 IGKV2-30P06310 120 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 CHRM5P08912 532 aaPredicted RBP5.16□□□□□ -1.58
CD44-239ENST00000639002 ATP5F1P24539 256 aaPredicted RBP5.16□□□□□ -1.58
CD44-239ENST00000639002 SLC7A1P30825 629 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 BCAT1P54687 386 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 KRTAP10-9P60411 292 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 IGBP1P78318 339 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 CCNIQ14094 377 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 Q4G0T1 1027 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 DNAJB14Q8TBM8 379 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 ZNF398Q8TD17 642 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 MMS19Q96T76 1030 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 TRIM5Q9C035 493 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 ZNF518BQ9C0D4 1074 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 VPS16Q9H269 839 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 TMEM60Q9H2L4 133 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 ELOVL5Q9NYP7 299 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 AMFRQ9UKV5 643 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 DRG1Q9Y295 367 aaKnown RBP5.16□□□□□ -1.58
CD44-239ENST00000639002 CDY1Q9Y6F8 540 aa5.16□□□□□ -1.58
CD44-239ENST00000639002 E5RJQ4 531 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 NR4A2P43354 598 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 SUMO3P55854 103 aaPredicted RBP5.15□□□□□ -1.59
CD44-239ENST00000639002 LMAN2Q12907 356 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 MAPK7Q13164 816 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 RAB32Q13637 225 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 LRRC41Q15345 812 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 FAM187BQ17R55 369 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 CERCAMQ5T4B2 595 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 MEX3CQ5U5Q3 659 aaKnown RBP5.15□□□□□ -1.59
CD44-239ENST00000639002 MIS18BP1Q6P0N0 1132 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 APOA5Q6Q788 366 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 BHLHA9Q7RTU4 235 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 CNGA4Q8IV77 575 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 SFTPA1Q8IWL2 248 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 SIRT6Q8N6T7 355 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 ADAMTS18Q8TE60 1221 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 A1CFQ9NQ94 594 aaKnown RBP5.15□□□□□ -1.59
CD44-239ENST00000639002 TUBA8Q9NY65 449 aaPredicted RBP5.15□□□□□ -1.59
CD44-239ENST00000639002 L1RE1Q9UN81 338 aa5.15□□□□□ -1.59
CD44-239ENST00000639002 TRIM43BA6NCK2 446 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 CAPN8A6NHC0 703 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 KCNAB3O43448 404 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 SPRY2O43597 315 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 IL1R2P27930 398 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 UQCRC1P31930 480 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 TIRAPP58753 221 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 MLC1Q15049 377 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 RABEP1Q15276 862 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 CNN3Q15417 329 aaKnown RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 TRIP6Q15654 476 aaKnown RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 NPY5RQ15761 445 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 SERPINA13PQ6UXR4 307 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 ZNF813Q6ZN06 617 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 SPARTQ8N0X7 666 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 PNISRQ8TF01 805 aaKnown RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 TRIM43Q96BQ3 446 aaPredicted RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 ZBTB45Q96K62 511 aaPredicted RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 TMEM79Q9BSE2 394 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 ZSCAN32Q9NX65 697 aa5.14□□□□□ -1.59
CD44-239ENST00000639002 NOB1Q9ULX3 412 aaKnown RBP5.14□□□□□ -1.59
CD44-239ENST00000639002 H7C4K7 107 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 PYCARD-AS1I3L0S3 204 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms