RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 FILIP1Q7Z7B0 1213 aa17.52■□□□□ 0.4
CLN3-255ENST00000637100 IL17RCQ8NAC3 791 aa17.52■□□□□ 0.4
CLN3-255ENST00000637100 MRPL45Q9BRJ2 306 aaKnown RBP17.52■□□□□ 0.4
CLN3-255ENST00000637100 PANK2Q9BZ23 570 aa17.52■□□□□ 0.4
CLN3-255ENST00000637100 TRIM9Q9C026 710 aa17.52■□□□□ 0.4
CLN3-255ENST00000637100 FAM92AA1XBS5 289 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 CEACAM1P13688 526 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 PTPN1P18031 435 aaKnown RBP17.51■□□□□ 0.39
CLN3-255ENST00000637100 GNL1P36915 607 aaPredicted RBP17.51■□□□□ 0.39
CLN3-255ENST00000637100 TNFRSF4P43489 277 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 CACNA2D1P54289 1103 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 PSMD2Q13200 908 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 PSMD6Q15008 389 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 C2orf27AQ580R0 203 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 DAB2IPQ5VWQ8 1189 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 PEAR1Q5VY43 1037 aaPredicted RBP17.51■□□□□ 0.39
CLN3-255ENST00000637100 PSAPL1Q6NUJ1 521 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 KCNV2Q8TDN2 545 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 OVCA2Q8WZ82 227 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 OTUB2Q96DC9 234 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 INTS4Q96HW7 963 aaKnown RBP17.51■□□□□ 0.39
CLN3-255ENST00000637100 ZFRQ96KR1 1074 aaKnown RBP17.51■□□□□ 0.39
CLN3-255ENST00000637100 PNKPQ96T60 521 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 TPSD1Q9BZJ3 242 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 LRRC27Q9C0I9 530 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 XYLT2Q9H1B5 865 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 CUEDC2Q9H467 287 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 VRTNQ9H8Y1 702 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 CPQQ9Y646 472 aa17.51■□□□□ 0.39
CLN3-255ENST00000637100 ZZEF1O43149 2961 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 E2F8A0AVK6 867 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 TNFRSF10BO14763 440 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 GIPC1O14908 333 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 KHNYNO15037 678 aaKnown RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 KAT7O95251 611 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 ANXA13P27216 316 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 SLC6A11P48066 632 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 TAF10Q12962 218 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 SNRNP35Q16560 246 aaKnown RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 ANO7Q6IWH7 933 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 DDX42Q86XP3 938 aaKnown RBP eCLIP17.5■□□□□ 0.39
CLN3-255ENST00000637100 SFTPA1Q8IWL2 248 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 ETFBKMTQ8IXQ9 262 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 C12orf56Q8IXR9 622 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 KDF1Q8NAX2 398 aaPredicted RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 LINC00301Q8NCQ3 95 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 ZNF516Q92618 1163 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 HPS3Q969F9 1004 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 FNBP1Q96RU3 617 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 CGRRF1Q99675 332 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 ELOVL4Q9GZR5 314 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 ZSCAN16Q9H4T2 348 aaPredicted RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 UPF2Q9HAU5 1272 aaKnown RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 AGPAT3Q9NRZ7 376 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 TBC1D14Q9P2M4 693 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 MTMR6Q9Y217 621 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 R3HCC1Q9Y3T6 440 aaKnown RBP17.5■□□□□ 0.39
CLN3-255ENST00000637100 PLXND1Q9Y4D7 1925 aa17.5■□□□□ 0.39
CLN3-255ENST00000637100 SGK1O00141 431 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 ZDHHC11BP0C7U3 371 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 GBP1P32455 592 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 GRIA2P42262 883 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 NOVA1P51513 510 aaKnown RBP17.49■□□□□ 0.39
CLN3-255ENST00000637100 IRX4P78413 519 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 CYP27A1Q02318 531 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 MAP7D1Q3KQU3 841 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 MDH1BQ5I0G3 518 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 TDRD10Q5VZ19 366 aaKnown RBP17.49■□□□□ 0.39
CLN3-255ENST00000637100 PAQR9Q6ZVX9 377 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 C12orf40Q86WS4 652 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 PDZD8Q8NEN9 1154 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 TMEM174Q8WUU8 243 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 SLITRK1Q96PX8 696 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 MMS19Q96T76 1030 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 B3GNT5Q9BYG0 378 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 TMEM9BQ9NQ34 198 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 INVSQ9Y283 1065 aa17.49■□□□□ 0.39
CLN3-255ENST00000637100 THADAQ6YHU6 1953 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 UPK3BL1B0FP48 263 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 PATE3B3GLJ2 98 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 UPK3BL2E5RIL1 263 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 ADAM23O75077 832 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 ALDH1A2O94788 518 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 RTN3O95197 1032 aaPredicted RBP17.48■□□□□ 0.39
CLN3-255ENST00000637100 ATICP31939 592 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 TUBP50607 506 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 CLDN10P78369 228 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 CEBPZQ03701 1054 aaKnown RBP17.48■□□□□ 0.39
CLN3-255ENST00000637100 CYP24A1Q07973 514 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 BMT2Q1RMZ1 405 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 WDR72Q3MJ13 1102 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 CYP2U1Q7Z449 544 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 NUP93Q8N1F7 819 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 CCDC33Q8N5R6 958 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 ALLCQ8N6M5 410 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 TXNDC5Q8NBS9 432 aaKnown RBP17.48■□□□□ 0.39
CLN3-255ENST00000637100 C7orf25Q9BPX7 421 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 ZNF518BQ9C0D4 1074 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 SNX25Q9H3E2 840 aa17.48■□□□□ 0.39
CLN3-255ENST00000637100 DPEP3Q9H4B8 488 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms