RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MLC1Q15049 377 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 MGAT5BQ3V5L5 792 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 LEXMQ3ZCV2 418 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 C4orf46Q504U0 113 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 C9orf47Q6ZRZ4 202 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 SFTPA1Q8IWL2 248 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 MAP4K1Q92918 833 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 MTFMTQ96DP5 389 aaKnown RBP3.71□□□□□ -1.82
SCN1A-208ENST00000625916 ZNF112Q9UJU3 913 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 SNX14Q9Y5W7 946 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 ZMYM2Q9UBW7 1377 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 SNUPNO95149 360 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 MT-CO3P00414 261 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 POU2F2P09086 479 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 PSG1P11464 419 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 RECQLP46063 649 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 ME1P48163 572 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 COPB1P53618 953 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 NANOS2P60321 138 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 PSG6Q00889 435 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 ERV3-1Q14264 604 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 NPY5RQ15761 445 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 AWAT1Q58HT5 328 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 ANO7Q6IWH7 933 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 TMEM65Q6PI78 240 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 CATIPQ7Z7H3 387 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 ANKRD13BQ86YJ7 626 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 CELF5Q8N6W0 485 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 ZNF398Q8TD17 642 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 THOC3Q96J01 351 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 CDK5RAP3Q96JB5 506 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 SMAD5Q99717 465 aaKnown RBP3.7□□□□□ -1.82
SCN1A-208ENST00000625916 C17orf80Q9BSJ5 609 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 HIPK2Q9H2X6 1198 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 CNNM1Q9NRU3 951 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 TMEM184CQ9NVA4 438 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 HEY2Q9UBP5 337 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 CPA4Q9UI42 421 aa3.7□□□□□ -1.82
SCN1A-208ENST00000625916 TLR2O60603 784 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 IL33O95760 270 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 THP07101 528 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 KCNA3P22001 575 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 GKP32189 559 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 SLC11A2P49281 568 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 CDKN1CP49918 316 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 DGKEP52429 567 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 WNT3P56703 355 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 ZIK1Q3SY52 487 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 EGFLAMQ63HQ2 1017 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 LVRNQ6Q4G3 990 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 COLCA1Q6ZS62 124 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 ZNF548Q8NEK5 533 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 PNISRQ8TF01 805 aaKnown RBP3.69□□□□□ -1.82
SCN1A-208ENST00000625916 TMEM171Q8WVE6 324 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 MESP1Q9BRJ9 268 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 ARMT1Q9H993 441 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 PROCRQ9UNN8 238 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 HS3ST3B1Q9Y662 390 aa3.69□□□□□ -1.82
SCN1A-208ENST00000625916 B4DGG1 531 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 PMPCBO75439 489 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 LMAN2Q12907 356 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 TMTC4Q5T4D3 741 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 DENND2CQ68D51 928 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 DLK2Q6UY11 383 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 PIP4P1Q86T03 277 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 C16orf71Q8IYS4 520 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-208ENST00000625916 SLC15A4Q8N697 577 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 ARFGAP1Q8N6T3 406 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 PPP2R3CQ969Q6 453 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 RSPRY1Q96DX4 576 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 MVB12AQ96EY5 273 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 FAM234AQ9H0X4 552 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 ZSCAN32Q9NX65 697 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 LPAR3Q9UBY5 353 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 MED16Q9Y2X0 877 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 SPEF1Q9Y4P9 236 aa3.68□□□□□ -1.82
SCN1A-208ENST00000625916 ALG1L2C9J202 215 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 SMAD6O43541 496 aaKnown RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 TULP3O75386 442 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 T-ENOLP0DO92 83 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 CDKN2AP42771 156 aaKnown RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 RPS13P62277 151 aaKnown RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 SRSF1Q07955 248 aaKnown RBP eCLIP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 LARS2Q15031 903 aaKnown RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 PLA1AQ53H76 456 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 CERCAMQ5T4B2 595 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 DAB2IPQ5VWQ8 1189 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 DEF8Q6ZN54 512 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 DCDC5Q6ZRR9 648 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 PTCHD4Q6ZW05 846 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 RAB11FIP4Q86YS3 637 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 LIX1LQ8IVB5 337 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 SPARTQ8N0X7 666 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 DNAJC5GQ8N7S2 189 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 BPIFB1Q8TDL5 484 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 HS6ST2Q96MM7 605 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 TRMOQ9BU70 441 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms