RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DNAJB2P25686 324 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 DHX34Q14147 1143 aaKnown RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 SDHAF4Q5VUM1 108 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 MGARPQ8TDB4 240 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.46■□□□□ 0.238e-11■■□□□ 13.1
CPSF1-213ENST00000620219 MBLAC1A4D2B0 266 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 PSTPIP1O43586 416 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 USP17L7P0C7H9 530 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 IZUMO3Q5VZ72 239 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 REM2Q8IYK8 340 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 TMEM121Q9BTD3 319 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 RGS16O15492 202 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 MAP2K2P36507 400 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 FLT3P36888 993 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 CTXN3Q4LDR2 81 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 SLFN11Q7Z7L1 901 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 RUNDC3BQ96NL0 473 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 MAP2K7O14733 419 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ALDH2P05091 517 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 RPLP2P05387 115 aaKnown RBP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 TCF4P15884 667 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ACADSBP45954 432 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 P3H1Q32P28 736 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ARL13BQ3SXY8 428 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 EFHC2Q5JST6 749 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 EFHC1Q5JVL4 640 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 SPOCD1Q6ZMY3 1216 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 SERINC5Q86VE9 423 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 DEFB106AQ8N104 65 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 PRELID2Q8N945 189 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 NETO2Q8NC67 525 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 AENQ8WTP8 325 aaKnown RBP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 RAPGEF5Q92565 580 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 WNT8BQ93098 351 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 SAYSD1Q9NPB0 183 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 GIT1Q9Y2X7 761 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 A0A1W2PQ45 241 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 A0A1W2PQY0 241 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 FAM187AA6NFU0 413 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ELF1P32519 619 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ULBP1Q9BZM6 244 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 HIPK3Q9H422 1215 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 DNAH12Q6ZR08 3092 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 YWHAGP61981 247 aaKnown RBP eCLIP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 ITKQ08881 620 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 LRRC8DQ7L1W4 858 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 PAAF1Q9BRP4 392 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 SYT11Q9BT88 431 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 CHST12Q9NRB3 414 aa16.45■□□□□ 0.22
CPSF1-213ENST00000620219 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.45■□□□□ 0.22
CPSF1-213ENST00000620219 PRRC2BQ5JSZ5 2229 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 TMEM191CA6NGB0 347 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 SIGLEC16A6NMB1 481 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 KRT15P19012 456 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 OTUD4Q01804 1114 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 ITIH3Q06033 890 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 SLC39A12Q504Y0 691 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 NOMO2Q5JPE7 1267 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 UNC93AQ86WB7 457 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 DDX27Q96GQ7 796 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 CEP290O15078 2479 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 GNGT1P63211 74 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 SLC6A3Q01959 620 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 TFDP3Q5H9I0 405 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 FAXCQ5TGI0 409 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 FAM71DQ8N9W8 422 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 ACTL9Q8TC94 416 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 C9orf72Q96LT7 481 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 STXBP5LQ9Y2K9 1186 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 KCNN4O15554 427 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 RAG1P15918 1043 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 ATP2A2P16615 1042 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 AP1B1Q10567 949 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 PLEKHA7Q6IQ23 1121 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 SMG8Q8ND04 991 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 EXD1Q8NHP7 514 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 GPR152Q8TDT2 470 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 NEUROG2Q9H2A3 272 aa16.44■□□□□ 0.22
CPSF1-213ENST00000620219 NOVA2Q9UNW9 492 aaKnown RBP16.44■□□□□ 0.22
CPSF1-213ENST00000620219 MYBPHLA2RUH7 354 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 MOXD2PA6NHM9 499 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 SPTLC1O15269 473 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 CLDN10P78369 228 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 PTK7Q13308 1070 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 ARHGEF18Q6ZSZ5 1173 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 CLEC4CQ8WTT0 213 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 FAF2Q96CS3 445 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 DERAQ9Y315 318 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 ABLIM1O14639 778 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 APOL1O14791 398 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 CKBP12277 381 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 CYP2C18P33260 490 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 MMRN1Q13201 1228 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 LPIN1Q14693 890 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 SH3PXD2AQ5TCZ1 1133 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 ANKRD42Q8N9B4 389 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 ANKRD52Q8NB46 1076 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 TTC13Q8NBP0 860 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 SETSIPP0DME0 302 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms