RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC18A2Q05940 514 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 MPP3Q13368 585 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TFDP1Q14186 410 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 KRT81Q14533 505 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 HP1BP3Q5SSJ5 553 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 MCOLN2Q8IZK6 566 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 AHI1Q8N157 1196 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 GSTCDQ8NEC7 633 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 RAB3IL1Q8TBN0 382 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 FNDC8Q8TC99 324 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 SLC26A7Q8TE54 656 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 DCAKDQ8WVC6 231 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 KAT5Q92993 513 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 LENG9Q96B70 501 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 KREMEN1Q96MU8 473 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 FAM111AQ96PZ2 611 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM117Q9H0C3 514 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 ALG13Q9NP73 1137 aaKnown RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 CNTN3Q9P232 1028 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 CSADQ9Y600 493 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 ZHX2Q9Y6X8 837 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 IGKV6D-41A0A0C4DH26 115 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 DENND3A2RUS2 1198 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 GOLGA8RI6L899 631 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 PEX2P28328 305 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 CIITAP33076 1130 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 FDFT1P37268 417 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 EMP3P54852 163 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 HUNKP57058 714 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 RAB15P59190 212 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 NOP14P78316 857 aaKnown RBP11.27□□□□□ -0.6
UPF3A-212ENST00000619079 LRRC36Q1X8D7 754 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 NADK2Q4G0N4 442 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 LPCAT4Q643R3 524 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 C3orf62Q6ZUJ4 267 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 SLC25A41Q8N5S1 370 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 CEP70Q8NHQ1 597 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 FBXO27Q8NI29 283 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 PYDC1Q8WXC3 89 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 DDX1Q92499 740 aaKnown RBP11.27□□□□□ -0.6
UPF3A-212ENST00000619079 FAM118BQ9BPY3 351 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 CCDC106Q9BWC9 280 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 BCAS3Q9H6U6 928 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 ZNF696Q9H7X3 374 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 DDX18Q9NVP1 670 aaKnown RBP11.27□□□□□ -0.6
UPF3A-212ENST00000619079 FAIMQ9NVQ4 179 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 TUBGCP4Q9UGJ1 667 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 PCDHA1Q9Y5I3 950 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 MAD1L1Q9Y6D9 718 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 CLUHO75153 1309 aa11.27□□□□□ -0.6
UPF3A-212ENST00000619079 SSC5DA1L4H1 1573 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 C2orf71A6NGG8 1288 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 E2F6O75461 281 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 USP2O75604 605 aaPredicted RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 TRMUO75648 421 aaKnown RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 SREBF1P36956 1147 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 GALK1P51570 392 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 APLP1P51693 650 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 FKBP1BP68106 108 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 NFX1Q12986 1120 aaKnown RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 GRM1Q13255 1194 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 LIN9Q5TKA1 542 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 DUS1LQ6P1R4 473 aaKnown RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 RCOR2Q8IZ40 523 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 APBB2Q92870 758 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 NLRP4Q96MN2 994 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 HSD17B14Q9BPX1 270 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 ADAM33Q9BZ11 813 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 MRPL47Q9HD33 250 aaKnown RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 ADAMTS6Q9UKP5 1117 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 DNPEPQ9ULA0 475 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 RAB26Q9ULW5 256 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 BARX2Q9UMQ3 279 aaPredicted RBP11.27□□□□□ -0.61
UPF3A-212ENST00000619079 LZTS1Q9Y250 596 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 DTNAQ9Y4J8 743 aa11.27□□□□□ -0.61
UPF3A-212ENST00000619079 TTLL13PA6NNM8 815 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 MSH4O15457 936 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 TBC1D12O60347 775 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 GDF11O95390 407 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ITGAVP06756 1048 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 CPOXP36551 454 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NR1H2P55055 460 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 VCPP55072 806 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NCKAP1LP55160 1127 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 SNRPFP62306 86 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 COG7P83436 770 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 SPIDRQ14159 915 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 LPIN1Q14693 890 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 SH3D19Q5HYK7 790 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 TMC7Q7Z402 723 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF677Q86XU0 584 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 CRLF3Q8IUI8 442 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ANKMY2Q8IV38 441 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PALM2Q8IXS6 379 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PPIL6Q8IXY8 311 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ANKRD13AQ8IZ07 590 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 XXYLT1Q8NBI6 393 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 CATSPER1Q8NEC5 780 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 KLRG1Q96E93 195 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NT5C1BQ96P26 610 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms