RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 ARL13BQ3SXY8 428 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 CYP4X1Q8N118 509 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 JOSD2Q8TAC2 188 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 AGR3Q8TD06 166 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 CCDC124Q96CT7 223 aaKnown RBP9.04□□□□□ -0.96
LIG4-204ENST00000611712 ZNF317Q96PQ6 595 aaPredicted RBP9.04□□□□□ -0.96
LIG4-204ENST00000611712 ACO2Q99798 780 aaKnown RBP9.04□□□□□ -0.96
LIG4-204ENST00000611712 COL4A1P02462 1669 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 E2F8A0AVK6 867 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 PEX10O60683 326 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 UNC5CO95185 931 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 NPTXRO95502 500 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 SULT1E1P49888 294 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 SERPINB9P50453 376 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 FAAP100Q0VG06 881 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 PTP4A2Q12974 167 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 PDK2Q15119 407 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 EMC10Q5UCC4 262 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 EEF1DP3Q658K8 133 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 JADE1Q6IE81 842 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 RWDD4Q6NW29 188 aaKnown RBP9.04□□□□□ -0.96
LIG4-204ENST00000611712 DSTYKQ6XUX3 929 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 BBS12Q6ZW61 710 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 PIGWQ7Z7B1 504 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 RASSF3Q86WH2 238 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 THTPAQ9BU02 230 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 DHX33Q9H6R0 707 aaKnown RBP9.04□□□□□ -0.96
LIG4-204ENST00000611712 BCAP29Q9UHQ4 241 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 KIAA1257Q9ULG3 409 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 STARD13Q9Y3M8 1113 aa9.04□□□□□ -0.96
LIG4-204ENST00000611712 CFLARO15519 480 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 B4GALT5O43286 388 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 ATP9BO43861 1147 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 NFICP08651 508 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 TAC1P20366 129 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 EPHB2P29323 1055 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 PDK4Q16654 411 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 C15orf59Q2T9L4 293 aaPredicted RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 KBTBD12Q3ZCT8 623 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 DCAF6Q58WW2 860 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 RNF43Q68DV7 783 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 NPNTQ6UXI9 565 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 PAXIP1Q6ZW49 1069 aaPredicted RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 SPOCK2Q92563 424 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 CD101Q93033 1021 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 TNIP3Q96KP6 325 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 TMEM120AQ9BXJ8 343 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 PIN4Q9Y237 131 aaKnown RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 FIS1Q9Y3D6 152 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 E5RJQ4 531 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 VNN1O95497 513 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 KRT16P08779 473 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 SRGAP2BP0DMP2 458 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 PTPN4P29074 926 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 SLC26A2P50443 739 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 MMRN1Q13201 1228 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 LAMC2Q13753 1193 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 PTPN20Q4JDL3 420 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 C6orf89Q6UWU4 347 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 MTMR14Q8NCE2 650 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 REPS2Q8NFH8 660 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 DNAJC9Q8WXX5 260 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 ZNF560Q96MR9 790 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 AP5M1Q9H0R1 490 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 BARX2Q9UMQ3 279 aaPredicted RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 C15orf41Q9Y2V0 281 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 CNTNAP1P78357 1384 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 GPC4O75487 556 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 RASSF9O75901 435 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 VSTM1Q6UX27 236 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 UNC45BQ8IWX7 931 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 SCUBE3Q8IX30 993 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 FITM2Q8N6M3 262 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 DDX1Q92499 740 aaKnown RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 COPS5Q92905 334 aa9.03□□□□□ -0.96
LIG4-204ENST00000611712 XAB2Q9HCS7 855 aaKnown RBP9.03□□□□□ -0.96
LIG4-204ENST00000611712 PPP1R12AO14974 1030 aaPredicted RBP9.02□□□□□ -0.96
LIG4-204ENST00000611712 NVLO15381 856 aaKnown RBP9.02□□□□□ -0.96
LIG4-204ENST00000611712 ATICP31939 592 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 ARL2P36404 184 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 SERPINB4P48594 390 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 HIRAP54198 1017 aaPredicted RBP9.02□□□□□ -0.96
LIG4-204ENST00000611712 KIZQ2M2Z5 673 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 GRAMD1BQ3KR37 738 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 ZNF484Q5JVG2 852 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 DENND5BQ6ZUT9 1274 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 POLNQ7Z5Q5 900 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 PRPF39Q86UA1 669 aaKnown RBP9.02□□□□□ -0.96
LIG4-204ENST00000611712 APPL2Q8NEU8 664 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 RMDN2Q96LZ7 410 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 STRA6Q9BX79 667 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 CDT1Q9H211 546 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 NDE1Q9NXR1 346 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.02□□□□□ -0.968e-10■■■■■ 70.3
LIG4-204ENST00000611712 RNF181Q9P0P0 153 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 GRID1Q9ULK0 1009 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 MYH11P35749 1972 aa9.02□□□□□ -0.96
LIG4-204ENST00000611712 CCDC78A2IDD5 438 aa9.02□□□□□ -0.97
LIG4-204ENST00000611712 FARP2O94887 1054 aaPredicted RBP9.02□□□□□ -0.97
LIG4-204ENST00000611712 EGFRP00533 1210 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms