RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SPOPLQ6IQ16 392 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 INTS8Q75QN2 995 aaKnown RBP12.27□□□□□ -0.45
LINC00539-204ENST00000608957 SV2AQ7L0J3 742 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 SCN4BQ8IWT1 228 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 MAML2Q8IZL2 1156 aaPredicted RBP12.27□□□□□ -0.45
LINC00539-204ENST00000608957 OR6B3Q8NGW1 331 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 MYCBPAPQ8TBZ2 947 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 TRMT2BQ96GJ1 504 aaKnown RBP12.27□□□□□ -0.45
LINC00539-204ENST00000608957 SHDQ96IW2 340 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 ZFYVE19Q96K21 471 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 MYRFLQ96LU7 910 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 ERGIC2Q96RQ1 377 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 B3GNT5Q9BYG0 378 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 TRPV5Q9NQA5 729 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 CCL26Q9Y258 94 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 DMDP11532 3685 aa12.27□□□□□ -0.45
LINC00539-204ENST00000608957 ZNF263O14978 683 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 CHADO15335 359 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 HLA-DRAP01903 254 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 PTPN1P18031 435 aaKnown RBP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SOX9P48436 509 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 AP3M2P53677 418 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 MCCD1P59942 119 aaPredicted RBP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 CYP27A1Q02318 531 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SYCP1Q15431 976 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 TAF12Q16514 161 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 TCERG1LQ5VWI1 586 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 C4orf50Q6ZRC1 276 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 PAQR9Q6ZVX9 377 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 CMTM8Q8IZV2 173 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 MAB21L3Q8N8X9 362 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 IRF7Q92985 503 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 USP13Q92995 863 aaPredicted RBP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SLC35C1Q96A29 364 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 CLDN23Q96B33 292 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SPATA17Q96L03 361 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SLC22A12Q96S37 553 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 OSBPL6Q9BZF3 934 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 ZNF518BQ9C0D4 1074 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 SNX25Q9H3E2 840 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 APOBEC3GQ9HC16 384 aaKnown RBP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 OBP2AQ9NY56 170 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 HMGXB4Q9UGU5 601 aa12.26□□□□□ -0.45
LINC00539-204ENST00000608957 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.26□□□□□ -0.45
LINC00539-204ENST00000608957 USP34Q70CQ2 3546 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 A8MXQ7 604 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 PROB1E7EW31 1015 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 ASS1P00966 412 aaKnown RBP12.25□□□□□ -0.45
LINC00539-204ENST00000608957 TPM1P09493 284 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 NBL1P41271 181 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 ASPAP45381 313 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 GCLMP48507 274 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 TNK2Q07912 1038 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 KCNH2Q12809 1159 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 ORC1Q13415 861 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 ZNF667Q5HYK9 610 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 TXNDC11Q6PKC3 985 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 VSTM1Q6UX27 236 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 MON1AQ86VX9 555 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 B3GALNT2Q8NCR0 500 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 TTC8Q8TAM2 541 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 BPIFB1Q8TDL5 484 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 E2F7Q96AV8 911 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 PCMTD1Q96MG8 357 aaPredicted RBP12.25□□□□□ -0.45
LINC00539-204ENST00000608957 GCNAQ96QF7 691 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 GCNT4Q9P109 453 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 NDRG2Q9UN36 371 aaKnown RBP12.25□□□□□ -0.45
LINC00539-204ENST00000608957 SIK3Q9Y2K2 1263 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 PIAS3Q9Y6X2 628 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 EML5Q05BV3 1969 aa12.25□□□□□ -0.45
LINC00539-204ENST00000608957 C2orf78A6NCI8 922 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 F8VP50 259 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 DPYSL4O14531 572 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 GYPCP04921 128 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 DDX6P26196 483 aaKnown RBP eCLIP12.24□□□□□ -0.45
LINC00539-204ENST00000608957 GRIK1P39086 918 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 PIK3CAP42336 1068 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 KLK7P49862 253 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 ENPEPQ07075 957 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 ARID5BQ14865 1188 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 MAPRE1Q15691 268 aaKnown RBP12.24□□□□□ -0.45
LINC00539-204ENST00000608957 ZNF852Q6ZMS4 543 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 ASCL5Q7RTU5 278 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 C1orf210Q8IVY1 113 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 YAF2Q8IY57 180 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 PIAS4Q8N2W9 510 aaPredicted RBP12.24□□□□□ -0.45
LINC00539-204ENST00000608957 TAS1R2Q8TE23 839 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 MRPS31Q92665 395 aaKnown RBP12.24□□□□□ -0.45
LINC00539-204ENST00000608957 IQCDQ96DY2 449 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 CHFRQ96EP1 664 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 C8orf48Q96LL4 319 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 VPS13AQ96RL7 3174 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 TWNKQ96RR1 684 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 CYP2S1Q96SQ9 504 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 NUP58Q9BVL2 599 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 TTLL2Q9BWV7 592 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 BCO2Q9BYV7 579 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 IRF2BPLQ9H1B7 796 aa12.24□□□□□ -0.45
LINC00539-204ENST00000608957 KCNF1Q9H3M0 494 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms