RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 IRF7Q92985 503 aa11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 TRPC7Q9HCX4 862 aa11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 TDP1Q9NUW8 608 aa11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 DLGAP2Q9P1A6 1054 aa11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 MTF2Q9Y483 593 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 ARIH1Q9Y4X5 557 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 ZFHX2Q9C0A1 2572 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-206ENST00000595523 TRAV19A0A0A6YYK7 116 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 DPYSL4O14531 572 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ZNF263O14978 683 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 RTN3O95197 1032 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 FGFR1OPO95684 399 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 OLFM2O95897 454 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 OAS1P00973 400 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 CKMP06732 381 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ZDHHC11BP0C7U3 371 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 FAM200BP0CF97 657 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 GLULP15104 373 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 YWHAQP27348 245 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ERCC5P28715 1186 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 TNK2Q07912 1038 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 TCF15Q12870 199 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 USP4Q13107 963 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ZNF77Q15935 545 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ARHGAP29Q52LW3 1261 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 CCDC105Q8IYK2 499 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 TTC39CQ8N584 583 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 EHBP1Q8NDI1 1231 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 FBXO32Q969P5 355 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 TMEM176AQ96HP8 235 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 NT5C1BQ96P26 610 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 FAM83CQ9BQN1 747 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 RNF38Q9H0F5 515 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 LTB4R2Q9NPC1 389 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 EHD2Q9NZN4 543 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 TRPM5Q9NZQ8 1165 aa11.63□□□□□ -0.55
SHKBP1-206ENST00000595523 ZNF292O60281 2723 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 KANSL1LA0AUZ9 987 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 OTOL1A6NHN0 477 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 GOLGA6L22H0YM25 854 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 RNF225M0QZC1 329 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 DCNP07585 359 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 USP17L7P0C7H9 530 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 HDCP19113 662 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 TBXAS1P24557 533 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 TARSP26639 723 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 SOX9P48436 509 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 PPP3CCP48454 512 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 FZD5Q13467 585 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 SNX30Q5VWJ9 437 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 ARHGAP17Q68EM7 881 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 RRAGAQ7L523 313 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 TTC30AQ86WT1 665 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 YAF2Q8IY57 180 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 PPM1KQ8N3J5 372 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 OVCA2Q8WZ82 227 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 JAKMIP2Q96AA8 810 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 CHFRQ96EP1 664 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 SHDQ96IW2 340 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 HEXIM2Q96MH2 286 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 KREMEN1Q96MU8 473 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 SLITRK1Q96PX8 696 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 ZSWIM1Q9BR11 485 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 CRACR2AQ9BSW2 395 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 DUSP16Q9BY84 665 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 INTS2Q9H0H0 1204 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 KCNH6Q9H252 994 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 THAP9Q9H5L6 903 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 KIF9Q9HAQ2 790 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 PNPLA8Q9NP80 782 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 HPS4Q9NQG7 708 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 GTSE1Q9NYZ3 720 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 GMIPQ9P107 970 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 CHORDC1Q9UHD1 332 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 ARHGAP26Q9UNA1 814 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 PIAS3Q9Y6X2 628 aa11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 RIF1Q5UIP0 2472 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-206ENST00000595523 MYO18AQ92614 2054 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 STK25O00506 426 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 CYP26A1O43174 497 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 GALR2O43603 387 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 CALCAP01258 141 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TCF3P15923 654 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 PFKLP17858 780 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TRIM21P19474 475 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 ZNF132P52740 706 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 SLC7A9P82251 487 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 APBA1Q02410 837 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 GCNT1Q02742 428 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 MTF1Q14872 753 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 UBXN2BQ14CS0 331 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 HSP90AA4PQ58FG1 418 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 MIIPQ5JXC2 388 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TRIM68Q6AZZ1 485 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TXNDC11Q6PKC3 985 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TMEM270Q6UE05 265 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 C11orf57Q6ZUT1 292 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 PDZD8Q8NEN9 1154 aa11.61□□□□□ -0.55
SHKBP1-206ENST00000595523 TTC8Q8TAM2 541 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms