RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SPPL2BQ8TCT7 592 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 VCPIP1Q96JH7 1222 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 HSFY1Q96LI6 401 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 DCLK3Q9C098 648 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 TUBGCP4Q9UGJ1 667 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 TLK1Q9UKI8 766 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 ADAM28Q9UKQ2 775 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 SNX24Q9Y343 169 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 C3orf70A6NLC5 250 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 TTC36A6NLP5 189 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 PSMD3O43242 534 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CAPN2P17655 700 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 NFIL3Q16649 462 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 GLE1Q53GS7 698 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 TMCO4Q5TGY1 634 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 ZNF571Q7Z3V5 609 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 FAM228AQ86W67 206 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CFAP36Q96G28 342 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 FMO2Q99518 471 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 C11orf84Q9BUA3 381 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 ULBP1Q9BZM6 244 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 WRAP73Q9P2S5 460 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 TTC7AQ9ULT0 858 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 ATP8A1Q9Y2Q0 1164 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 KCNN4O15554 427 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CST8O60676 142 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 KRT14P02533 472 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 FGFR1P11362 822 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CAV1Q03135 178 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 GPS1Q13098 491 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 PPP1R2P1Q96PQ5 205 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 ZIC5Q96T25 663 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CORO1BQ9BR76 489 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 OXCT2Q9BYC2 517 aaPredicted RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 GOLGA2P5Q9HBQ8 144 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 VPS18Q9P253 973 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 INSL6Q9Y581 213 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 ARL5CA6NH57 179 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 LRRC10BA6NIK2 292 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 LTFP02788 710 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 EPHB4P54760 987 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 DHX9Q08211 1270 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 CUL1Q13616 776 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 FUT10Q6P4F1 479 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 RBM23Q86U06 439 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 EMC1Q8N766 993 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 ATL2Q8NHH9 583 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 USP33Q8TEY7 942 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 MYLPFQ96A32 169 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 COL6A1P12109 1028 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 KPNA2P52292 529 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 KRT33BQ14525 404 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 LLGL2Q6P1M3 1020 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 CCDC137Q6PK04 289 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 C16orf70Q9BSU1 422 aa10.25□□□□□ -0.77
LIG3-216ENST00000593099 DDX47Q9H0S4 455 aaKnown RBP10.25□□□□□ -0.77
LIG3-216ENST00000593099 F5H423 210 aaPredicted RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 AP3B1O00203 1094 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ZNF197O14709 1029 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SLC9A3R1O14745 358 aaPredicted RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 PAPOLAP51003 745 aaKnown RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 PRAMEP78395 509 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 PDK2Q15119 407 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 RAB30Q15771 203 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 P3H1Q32P28 736 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 LCA5Q86VQ0 697 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SPATA20Q8TB22 786 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 KAT5Q92993 513 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SNX27Q96L92 541 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 FAM187AA6NFU0 413 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ZMYND10O75800 440 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 BMP6P22004 513 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ATP5C1P36542 298 aaKnown RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 PSEN1P49768 467 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CCZ1BP86790 482 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CCZ1P86791 482 aaPredicted RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 HECTD3Q5T447 861 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 FYB2Q5VWT5 728 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 PPP2R2DQ66LE6 453 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 MCOLN2Q8IZK6 566 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CARNMT1Q8N4J0 409 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 OGFRQ9NZT2 677 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 TNRC6CQ9HCJ0 1690 aaKnown RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 F8VP50 259 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 RHOCP08134 193 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 MXRA7P84157 204 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 POU5F1Q01860 360 aaKnown RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 SLC6A3Q01959 620 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 POLD3Q15054 466 aaPredicted RBP10.24□□□□□ -0.77
LIG3-216ENST00000593099 SCUBE3Q8IX30 993 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ANKS4BQ8N8V4 417 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ANKRD52Q8NB46 1076 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SPATA18Q8TC71 538 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ARNTL2Q8WYA1 636 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 FGFBP2Q9BYJ0 223 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ABCC13Q9NSE7 274 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 UBAP1Q9NZ09 502 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 MARCH2Q9P0N8 246 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CDY1Q9Y6F8 540 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 BRWD3Q6RI45 1802 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms