RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 FAM3CQ92520 227 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 MYLPFQ96A32 169 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 SMARCD1Q96GM5 515 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 PCED1BQ96HM7 432 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CHAMP1Q96JM3 812 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CEP63Q96MT8 703 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 DUSP9Q99956 384 aaKnown RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 FBXO44Q9H4M3 255 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 PNPLA8Q9NP80 782 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CRTAC1Q9NQ79 661 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 TMLHEQ9NVH6 421 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 OBSL1O75147 1896 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 LRP3O75074 770 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 SOAT2O75908 522 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 AKAP3O75969 853 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 GNA14O95837 355 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 RETP07949 1114 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 HDCP19113 662 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 BDNFP23560 247 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 PIK3CAP42336 1068 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 PRCPP42785 496 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 CASP4P49662 377 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 KPNA1P52294 538 aaPredicted RBP11.15□□□□□ -0.62
LIG3-212ENST00000590181 YWHAEP62258 255 aaKnown RBP11.15□□□□□ -0.62
LIG3-212ENST00000590181 INCA1Q0VD86 236 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 FZD5Q13467 585 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 SNX30Q5VWJ9 437 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 PRR23CQ6ZRP0 262 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 FILIP1Q7Z7B0 1213 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 TMEM150AQ86TG1 271 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 ZC3H3Q8IXZ2 948 aaKnown RBP11.15□□□□□ -0.62
LIG3-212ENST00000590181 NUP93Q8N1F7 819 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 ZNF687Q8N1G0 1237 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 TMEM130Q8N3G9 435 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 ZNF276Q8N554 614 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 MAB21L3Q8N8X9 362 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 MRPL45Q9BRJ2 306 aaKnown RBP11.15□□□□□ -0.62
LIG3-212ENST00000590181 NT5C1AQ9BXI3 368 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 UBXN6Q9BZV1 441 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 GDPD2Q9HCC8 539 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 IL37Q9NZH6 218 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 CHMP5Q9NZZ3 219 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 KIAA1257Q9ULG3 409 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 MAGED2Q9UNF1 606 aaPredicted RBP11.15□□□□□ -0.62
LIG3-212ENST00000590181 COQ4Q9Y3A0 265 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 PCDHA5Q9Y5H7 936 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 PIAS3Q9Y6X2 628 aa11.15□□□□□ -0.62
LIG3-212ENST00000590181 IGF2RP11717 2491 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ATRXP46100 2492 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 EML5Q05BV3 1969 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 P4HA2O15460 535 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ATG13O75143 517 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ATP2C2O75185 946 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 PAPSS2O95340 614 aaPredicted RBP11.14□□□□□ -0.63
LIG3-212ENST00000590181 VNN1O95497 513 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 HLA-DRAP01903 254 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 PRR29P0C7W0 189 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 GJA1P17302 382 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 CCNE1P24864 410 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 YWHAQP27348 245 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 SLC8A3P57103 927 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 UBE2HP62256 183 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 SATB1Q01826 763 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 PNOCQ13519 176 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 FBXO43Q4G163 708 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 PREPLQ4J6C6 727 aaPredicted RBP11.14□□□□□ -0.63
LIG3-212ENST00000590181 POTEHQ6S545 545 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 TADA2BQ86TJ2 420 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 PLEKHO2Q8TD55 490 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ATP2A3Q93084 1043 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 OTUB2Q96DC9 234 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 HNRNPABQ99729 332 aaKnown RBP11.14□□□□□ -0.63
LIG3-212ENST00000590181 FAM83CQ9BQN1 747 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 NIF3L1Q9GZT8 377 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 CSNK1G1Q9HCP0 422 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 DMAP1Q9NPF5 467 aaPredicted RBP11.14□□□□□ -0.63
LIG3-212ENST00000590181 SEMA4GQ9NTN9 838 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 RAB20Q9NX57 234 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 TBC1D14Q9P2M4 693 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ARMCX3Q9UH62 379 aaPredicted RBP11.14□□□□□ -0.63
LIG3-212ENST00000590181 ARHGAP26Q9UNA1 814 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 ZFYVE26Q68DK2 2539 aa11.14□□□□□ -0.63
LIG3-212ENST00000590181 SPEGQ15772 3267 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 FAM92AA1XBS5 289 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 ZNF840PA6NDX5 716 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 F8VP50 259 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 CLSTN1O94985 981 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 CKMP06732 381 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 TBXAS1P24557 533 aaPredicted RBP11.13□□□□□ -0.63
LIG3-212ENST00000590181 HOXA6P31267 233 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 CNR2P34972 360 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 PSEN1P49768 467 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 MXI1P50539 228 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 PSMC1P62191 440 aaKnown RBP11.13□□□□□ -0.63
LIG3-212ENST00000590181 DLG4P78352 724 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 SLC7A9P82251 487 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 DMWDQ09019 674 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 GRSF1Q12849 480 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIG3-212ENST00000590181 RUNX3Q13761 415 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms